Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1032 ATGGATACAGCCTGGGCAATAACGCTGTATTGGGTGGAGAGAGAAAGAAGGAGTCCACTTTATTCTGAAATTTGGTTCCCAAATTACCCTCCTTCCCTCCTTTATTGCCCCTCGTCTTCTGTTTTATTCCCACTCCTGCCTCCGTCTCGTTCCATTTGTCTCCTATCTTGCCCACTTCGTGCCCGGAAAATCCCATATTTTCATCAGATCCAACATATCTGCGCGAAGTATTTTTCCCCGCTGTCATCCATGACGCTTGGCTCAAGAGGATCGAGTGTCGTGGTCCCAAGGAACTTTAGATTGCTGGAGGAACTTGAACGGGGAGAAAAAGGTATTGGAGATGGCACAGTTAGCTATGGAATGGACGATGGTGATGACATATACATGCGCTCTTGGACTGGCACCATCATTGGTCCCCATAATACTGTACATGAAGGAAGAATTTATCAGTTGAAGCTGTTTTGTGATAAAGATTACCCAGAGAAGCCCCCAAGTGTTCGATTTCATTCACGGATCAATATGACCTGTGTTAATCATGAAACTGGAGTGGTTGAACCAAAGAAATTTGGTGTTCTTGCAAATTGGCAAATAGAGTACACCATGGAGGATATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCCCATAACCGGAAGCTTGTGCAGCCTCCAGAAGGAACCTACTTTTAG 690 0.4565 MDTAWAITLYWVERERRSPLYSEIWFPNYPPSLLYCPSSSVLFPLLPPSRSICLLSCPLRARKIPYFHQIQHICAKYFSPLSSMTLGSRGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGVLANWQIEYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1032 229 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 87 229 - -
Lele05g1032 229 SMART ubc_7 99 227 - -
Lele05g1032 229 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 129 217 - -
Lele05g1032 229 Pfam Ubiquitin-conjugating enzyme 126 219 IPR000608 -
Lele05g1032 229 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 96 229 IPR000608 -
Lele05g1032 229 SUPERFAMILY UBC-like 94 229 IPR016135 -
Lele05g1032 229 Gene3D Ubiquitin Conjugating Enzyme 81 229 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1032 Lele-ChrLele05 6413332 6418950 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1620 13 25129898 25137053 Lele05g1032 05 6413332 6418950 CCT
Lele15g0795 15 4577425 4584614 Lele05g1032 05 6413332 6418950 CCT
Lele16g0809 16 4541700 4546019 Lele05g1032 05 6413332 6418950 CCT
Lele05g1032 05 6413332 6418950 Lele05g1032 05 6413332 6418950 ECH
Lele05g1032 05 6413332 6418950 Lele07g1071 07 6464275 6471044 hybridization
Lele05g1032 05 6413332 6418950 Lele08g0883 08 5575983 5578894 hybridization