Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0883 ATGACGCTTGGCTCAAGAGGATCGAGTGTCGTGGTCCCAAGGAACTTCAGATTGCTGGAGGAACTTGAACGGGGAGAAAAGGGTATTGGTGATGGCACAGTTAGCTATGGAATGGACGATGGTGATGACATATACATGCGCTCTTGGACTGGCACCATCATCGGTCCCCATAATACCGTACATGAAGGAAGAATTTATCAGTTGAAGCTTTTCTGCGATAAAGACTACCCAGAGAAGCCCCCAAGTGTTCGATTTCATTCACGGATCAATATGATCTGTGTTAATCATGAAACTGGAGTGGTTGAACCAAAAAAGTTTGGTGTTCTTGCAAATTGGCGCAGAGAGTACACCATGGAGGATATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCCCCTAACCGGAAGCTTGTGCAGCCTTCAGAAGGGACCTACTTTTAG 441 0.4694 MTLGSRGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMICVNHETGVVEPKKFGVLANWRREYTMEDILTQLKKEMAAPPNRKLVQPSEGTYF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0883 146 SMART ubc_7 16 144 - -
Lele08g0883 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Lele08g0883 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 46 134 - -
Lele08g0883 146 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 4 146 - -
Lele08g0883 146 Pfam Ubiquitin-conjugating enzyme 43 135 IPR000608 -
Lele08g0883 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Lele08g0883 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0883 Lele-ChrLele08 5575983 5578894 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1620 13 25129898 25137053 Lele08g0883 08 5575983 5578894 CCT
Lele15g0795 15 4577425 4584614 Lele08g0883 08 5575983 5578894 CCT
Lele16g0809 16 4541700 4546019 Lele08g0883 08 5575983 5578894 CCT
Lele08g0883 08 5575983 5578894 Lele08g0883 08 5575983 5578894 ECH
Lele05g1032 05 6413332 6418950 Lele08g0883 08 5575983 5578894 hybridization
Lele06g0894 06 5558286 5561029 Lele08g0883 08 5575983 5578894 hybridization