Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1071 ATGGATACAGCCTGGGCAATAACGCTGTATTGGACGGAGAGAGAGAAGGGTCATGAAGAAGAGGAGCCACAGCGTCGTCGGAGTAGAAACCTCCGTTGTCTCCTATCTTGCCCACTTCGTGCCCGGAAAATCCCGTATTTTCATCAGATCCAACACATCTGCGCGAAGTATTTTCCCCCTCTGTCATCCATGACGCTTGGCTCAAGAGGATCGAGTGTCGTGGTCCCAAGGAACTTTAGATTGCTGGAGGAACTTGAACGGGGAGAAAAAGGTATTGGAGATGGCACAGTTAGCTATGGAATGGACGATGGTGATGACATATACATGCGCTCTTGGACTGGCACCATCATTGGTCCCCATAATACTGTACATGAAGGAAGAATTTATCAGTTGAAGCTGTTTTGTGATAAAGATTACCCAGAGAAGCCCCCAAGTGTTCGATTTCATTCACGGATCAATATGACGTGTGTTAATCATGAAACTGGAGTGGTTGAACCAAAGAAATTTGGTGTTCTTGCCAATTGGCAACGAGAGTACACCATGGAGGATATACTGACCCAGCTGAAGAAGGAAATGGCCGCTCCCCATAACCGGAAGCTTGTGCAGCCTCCAGAAGGAACCTACTTTTAG 630 0.473 MDTAWAITLYWTEREKGHEEEEPQRRRSRNLRCLLSCPLRARKIPYFHQIQHICAKYFPPLSSMTLGSRGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGVLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1071 209 SMART ubc_7 79 207 - -
Lele07g1071 209 Pfam Ubiquitin-conjugating enzyme 106 199 IPR000608 -
Lele07g1071 209 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 67 209 - -
Lele07g1071 209 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 109 197 - -
Lele07g1071 209 Gene3D Ubiquitin Conjugating Enzyme 62 209 IPR016135 -
Lele07g1071 209 SUPERFAMILY UBC-like 74 209 IPR016135 -
Lele07g1071 209 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 76 209 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1071 Lele-ChrLele07 6464275 6471044 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1620 13 25129898 25137053 Lele07g1071 07 6464275 6471044 CCT
Lele15g0795 15 4577425 4584614 Lele07g1071 07 6464275 6471044 CCT
Lele16g0809 16 4541700 4546019 Lele07g1071 07 6464275 6471044 CCT
Lele07g1071 07 6464275 6471044 Lele07g1071 07 6464275 6471044 ECH
Lele05g1032 05 6413332 6418950 Lele07g1071 07 6464275 6471044 hybridization
Lele06g0894 06 5558286 5561029 Lele07g1071 07 6464275 6471044 hybridization