Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0657 ATGCAGTCGGGTCCTAAACACCCATTACTCTCCGCCCAGCATCAATCTTCCAAAACGAACGGCTGCGAAGTGCCATGCCCTGTTTTCCCTCGAGATCCGAACTCACGCATACAGAACAAAGCGCACGTTTGCTATCCTGCGCCCTTCCCTGACTCCTCTGCTCACCTCTCTCACCGCATCCGTGTGTCCTCGCTCCTCGCACCCCTAACTTCCCCGCCCCTTCCTTTCTTCTCTGTTCTCCTGCTTCAATATTGTTCCTTATTAAGAACACAAACTAGAGAAAGGAACAAGCGAACCAACGCCAAAACAACAATGAAGCATACATCGTCCGAGGCTACTCCATCTTTATCTTCGGCAGCCTGTTCAACAGACCAATCACACGTTGCCACTCCATCGTCGGCGCTGGCTTCCCCGGACAAACCGGTTTTAGGTTCGTCCGCCGCTGCTCCAGAGGACTTGGCTATAGGGTCAAGGGACGGAGGCGGCGCCCAGGAGTCCGTGACTGTCGAACGCCGGGGCGATTACTCGGCCGTTTGCCGATGGACGGTTCATAATTTTCCACGAATAAAAGCTAGGGCGCTATGGAGCAAGTATTTTGAGGTCGGAGGTTATGATTGCCGTCTTTTGATATACCCCAAGGGTGACTCTCAAGCCTTGCCAGGCTATATTTCCATCTACCTCCAAATCATGGATCCTCGGGGCACTTCCTCGTCCAAATGGGACTGTTTTGCTAGCTACCGTTTGGCAATCGCGAACGTCGCCGACGATTCTAAGACCATTCATCGGGATTCGTGGCATCGGTTCTCTAGTAAGAAGAAATCACACGGGTGGTGTGATTTCACGCCTTCTACAACAGTACTCGATCCAAAGTTGGGTTACTTGTTTAATGGTGATTCGGTATTGATAACCGCCGATATTCTTATTCTTAATGAGTCCATTAATTTTACTCGAGACAACAATGAGCTGCAATCATCGGCGTCTTCTTCTTCATCCATGATATCTTCCTCTGTTGTTGCAAGTCCTGTGTCCGACGTGTTGAGTGGAAAATTCACTTGGAAAGTGCATAATTTCAGTTTATTCAAGGAGATGATAAAAACACAGAAGATAATGAGCCCCGTTTTCCCAGCTGGGGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCGGTTAATGGGGTCGAATATCTGTCAATGTGCTTGGAAAGCAAGGATACAGACAAGACTGTGATGTTGTCTGATAAGAGTTGCTGGTGTTTATTTCGAATGTCTGTCTTGAACCAGAGGCCAGGTTCGAATCACATGCATAGGGATTCGTATGGGCGGTTTGCAGCTGATAATAAAAGTGGTGATAATACGAGCTTGGGATGGAATGATTATATGAAGATGTCGGATTTTATTGGGCCTGATTCAGGGTTTCTGGTGGATGACACTGCAGTTTTTAGTACGTCATTTCATGTGATTAAAGAGCTTAGTAGCTTCTCTAAGAATGGGGCTTTAATTGCAGGAAGAAGTGGGAATGGCGCAAGGAAATCAGATGGTCATATGGGTAAGTTTACTTGGAGGATTGAAAACTTCACAAGGTTAAAGGATTTATTGAAGAAGAGAAAAATCACCGGTCTTTGCATCAAGAGCCGGAGGTTTCAAATTGGTAATCGGGATTGTCGTCTCATTGTATATCCCCGAGGGCAGTCACAGCCTCCATGCCACCTTTCAGTGTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGGTTGTCAGTTGTGAACCAGAAGATGGAGGAGAAGTCTGTTAGCAAGGAATCTCAGAACCGCTACTCCAAGGCTGCAAAAGATTGGGGCTGGCGTGAGTTTGTGACCCTCACAAGCCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGATGCTGTTGTATTCTCAGCAGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTGATTGGTTACAATTCTGAGTTGAGTAGTGGTAGTTCCCTTACTGATGGTTATGTAAAGAGAAGGACATTTACATGGAAAGTGGAGAATTTCCTGTCATTTAAGGAAATAATGGAGACTCGAAAGATTTTCAGTAAATTTTTTCAGGCGGGTGGATGTGAACTCCGGATTGGTGTTTATGAGTCCTTTGACACCATATGTATTTATCTAGAGAGCGACCAGGCTGTTGGGAGTGATCCAGATAAAAACTATTGGGTTAAATACAGGATGGCTGTTGTGAATCAAAAGAATCCAGCCAAGACAGTGTGGAAGGAATCCTCTATTTGTACGAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATATTGGAAGCAGATGCAGGGTTTCTTGTCCGTGACACTGTTGTTTTTGTCTGTGAAATATTGGATTGCTGCCCTTGGTTTGATTTTTCGGACTTAGAGGTTTTAGCTTCAGATGATGATCAGGATGCTTTGACAACTGATCCTGATGAACTTGTTGACTCTGAAGACAGTGAAGGAATAAGTGGAGACGAAGAAGACATTTTTAGAAATCTTCTTTCTCGAGCTGGATTTCACCTAACATATGGAGACAATCCTTCACAGCCACAAGTTACTTTTAGAGAAAAGCTTTTAATGGATGCTGGTGCAATTGCTGGACTAACGACTGGACTGCGACTTTATCTCGATGATCCTGTGAAAGTAAAGCATCTGCTTCTTCCAACTAAGCTCTCTGGTAGTTGTGATGGGAAGAAGGTTGCTAAGGCCGATGAATCTTCCCCCAGTTTGATGAACTTGCTGATGGGGGTTCAGGTCTTGCAGCAGGCAATGATTGATTTACTTTTGGATATAATGGTGGAATGCTGCCAACCTTCCAAAGGGTCCTGTGCTACTGATTCTCCTGAAGCATGCTCGAAAGCATCTCCTGATAGCAGTGGAGCTGCTAGTCCTCTTGAATGTGATAGAGAAAATGGGGCAGCAGAATCTGCTCAATTTCCTGTTTATGAGAGGTTGGATTCTGCTGATGAAGAAAGTAGTAGTGCATCTGCTGTACAAAGCTCTGATTCAAACGTTAGTGTTAGTCAGGAGAAAGCTCTTCCTGGACAACCTATTTTTCCACCTGAAACAGCTGCTGTTGTTTCAGAAAATCCATCCTTTCGATCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTCTTAGGTTTGGTTGTAAACTCACTAAGAACCCTTGATGGGGTTGTTCCGCAAGGCTGCCCTGAGCCACGACGGTGTCCTCAGTCTGCACTCAAAATTTCTATTGTGTTGGACAAAGCTCCCAAGCATCTGCATGCTGACCTAGTAGCACTGGTTCCCAAGTTGGTTGAGCCCTCAGAACATCCACTAGCTGCCTGTGCACTTCTTGAGCGACTTCAAAAGCCAGATGCAGAACCTGCCTTGCGAATGCCTGTTTTTGATGCTCTTAGTCAACTGGAGTGTGGTAGTGAAGTGTGGGAACGTGTTCTATTTCAATCAATTGAGCTTTTGGCTGACTCAAATGGCGAACCCCTTGCTGCAACTATAGATTTTATATTCAAAGCAGCATCTCAGTGTCAACATCTTCCTGAAGCAGTTAGATCTGTTCGTCTCAGACTAAAAAATCTAGGTCTTCAGGTTTCACCTTGTGTCCTTGACTTTTTGAGTGAGACTATTAATAGTTGGGGGGATGTTGCTGAAACTATACTGAGGGACATTGATTGTGATGATGACATGGGTGACAGTTGCTCAGCGCTGTCATGTGAACTTTTCTTATTTGGTGAACATGGCGCAGCTCCTACTGGATTGAATGTGGTTGATGAACAGGCTTTCCGAGCTAGTTGTAATTTTTCTGATATTTACATACTGATTGAGATGCTATCAATTCCTTGTCTTGCTGTTGAAGCTTCTCAAACCTTTGAGAGAGCTGTAGCTCGAGGGGCAATTGGTGCTCAGTCTGTAGCCTTGGTTTTGGAGAAGCGTGCCTCCCAAAGATTGACTAATATTTCCAGAAATGCAGCTGAAAGTTTTCCATGTTCAAATGTTGTTGCAGAGGGAAATGCCAATGAACCCTTTGGAGTTCAAAGAGATGATTTTGCTTCAGTTCTTGGTCTTGCTGAAACATTAGCTCTTTCCAGAGACCCATGCGTGAAAGAATTTGTAAAGTTACTCTATATGATATTGTTTAGATGGTATGTTGATGAATCTTATCGAGCGACAATGCTTAAGAGGCTTGTTGACCGAGCCACCAGCACTACAGATAATGGACATGAAGAAGATTTAGATTTGGATATTTTAGTTACTTTGGCCTGTGAGGAGCAGGAAATGGCTAGATCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGGTCTGCTCTATGGCACCAGTTATGTGCTAGTGAAGACGAAATCATTCGTCTTCGTGAAGAAAAGAAAGCTGAGATTTCCAATATGGCTAAGGAAAAAGCTGCTGTTACACAAAAACTGAGTGAATCCGAGGCCACAAGTATTCATCTCAAGTCTGAGATGAGGGCTGAGATGGATCGGTGGGCTCGGGAGAAGAAGGAGCTAGTTGAACAAATACAAGAGGTTGAAAGTCAGCTTGAGTGGCTTCGTTCAGAGCGGGATGATGAAATAGCAAAGCTCTCTGCAGAGAAGAAATCTCTTCAGGACCGTGTGCATGATGCTGAGGCACAACTCTCACAATTTAAGTCGCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAAAAAAATGCTCTTGCCGAAAGATTGAAGAGTGCTGAAGCTGCACGGAAGAGATTTGATGAAGAACTGAAAAGATATGCAACAGAAAATGTCACTCGGGAAGAAGTACGAAAATCGCTTGAGGATGAAGTTCGTAGATTGTCGCAAACGGTCGGGCAAACTAAGGGAGAAAAGAGAGAAAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAATTGCAGGCCTGCCAGCAATATATTCACACACTGGAAGCTTCGCTTCAGGAGGAAATGTCACGTCATGCTCCTCTATACGGTGCTGGTCTGGAGGCTCTTTCAATGAAAGAGTTGGAAACACTGTCACGTATCCACGAGGAAGGACTAAGGCAGATCCATGCCCTTCAACAGCGTAAAGGGAGTCCAGCTGGCAGTCCTCTTGTGAGTCCACATGCCCTTCCTCACAATCATGGATTATATCCCTCTGCCTCCCCTCCATTGCCTGTGGGGCTCCCTCCATCACTCATTCCAAATGGGTTAGGCCTCCACAGCAATGGCCACGTCAACGGCGCTGTGGGGCCCTGGTTTAAGCACACTTGA 5385 0.4477 MQSGPKHPLLSAQHQSSKTNGCEVPCPVFPRDPNSRIQNKAHVCYPAPFPDSSAHLSHRIRVSSLLAPLTSPPLPFFSVLLLQYCSLLRTQTRERNKRTNAKTTMKHTSSEATPSLSSAACSTDQSHVATPSSALASPDKPVLGSSAAAPEDLAIGSRDGGGAQESVTVERRGDYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIANVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSTTVLDPKLGYLFNGDSVLITADILILNESINFTRDNNELQSSASSSSSMISSSVVASPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVMLSDKSCWCLFRMSVLNQRPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGPDSGFLVDDTAVFSTSFHVIKELSSFSKNGALIAGRSGNGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVSKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDAVVFSAEVLILKETSIMQDLIGYNSELSSGSSLTDGYVKRRTFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNYWVKYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDILEADAGFLVRDTVVFVCEILDCCPWFDFSDLEVLASDDDQDALTTDPDELVDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTFREKLLMDAGAIAGLTTGLRLYLDDPVKVKHLLLPTKLSGSCDGKKVAKADESSPSLMNLLMGVQVLQQAMIDLLLDIMVECCQPSKGSCATDSPEACSKASPDSSGAASPLECDRENGAAESAQFPVYERLDSADEESSSASAVQSSDSNVSVSQEKALPGQPIFPPETAAVVSENPSFRSKTKWPEQSEELLGLVVNSLRTLDGVVPQGCPEPRRCPQSALKISIVLDKAPKHLHADLVALVPKLVEPSEHPLAACALLERLQKPDAEPALRMPVFDALSQLECGSEVWERVLFQSIELLADSNGEPLAATIDFIFKAASQCQHLPEAVRSVRLRLKNLGLQVSPCVLDFLSETINSWGDVAETILRDIDCDDDMGDSCSALSCELFLFGEHGAAPTGLNVVDEQAFRASCNFSDIYILIEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLEKRASQRLTNISRNAAESFPCSNVVAEGNANEPFGVQRDDFASVLGLAETLALSRDPCVKEFVKLLYMILFRWYVDESYRATMLKRLVDRATSTTDNGHEEDLDLDILVTLACEEQEMARSVLSMMREVAELANVDRSALWHQLCASEDEIIRLREEKKAEISNMAKEKAAVTQKLSESEATSIHLKSEMRAEMDRWAREKKELVEQIQEVESQLEWLRSERDDEIAKLSAEKKSLQDRVHDAEAQLSQFKSRKRDELKKVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEVRKSLEDEVRRLSQTVGQTKGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHALQQRKGSPAGSPLVSPHALPHNHGLYPSASPPLPVGLPPSLIPNGLGLHSNGHVNGAVGPWFKHT 1794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0657 1794 CDD MATH 348 480 IPR002083 GO:0005515
Lele04g0657 1794 Gene3D - 1551 1744 - -
Lele04g0657 1794 MobiDBLite consensus disorder prediction 94 123 - -
Lele04g0657 1794 ProSiteProfiles MATH/TRAF domain profile. 683 807 IPR002083 GO:0005515
Lele04g0657 1794 SUPERFAMILY TRAF domain-like 684 808 - -
Lele04g0657 1794 MobiDBLite consensus disorder prediction 1 20 - -
Lele04g0657 1794 Coils Coil 1521 1626 - -
Lele04g0657 1794 ProSiteProfiles MATH/TRAF domain profile. 176 306 IPR002083 GO:0005515
Lele04g0657 1794 PANTHER TRAF-LIKE FAMILY PROTEIN 127 1794 - -
Lele04g0657 1794 CDD MATH 180 306 IPR002083 GO:0005515
Lele04g0657 1794 MobiDBLite consensus disorder prediction 971 993 - -
Lele04g0657 1794 SUPERFAMILY TRAF domain-like 176 313 - -
Lele04g0657 1794 Coils Coil 1634 1661 - -
Lele04g0657 1794 MobiDBLite consensus disorder prediction 103 123 - -
Lele04g0657 1794 MobiDBLite consensus disorder prediction 1016 1036 - -
Lele04g0657 1794 CDD MATH 685 807 IPR002083 GO:0005515
Lele04g0657 1794 SMART math_3 178 286 IPR002083 GO:0005515
Lele04g0657 1794 SMART math_3 688 788 IPR002083 GO:0005515
Lele04g0657 1794 SMART math_3 520 632 IPR002083 GO:0005515
Lele04g0657 1794 SMART math_3 352 465 IPR002083 GO:0005515
Lele04g0657 1794 MobiDBLite consensus disorder prediction 1730 1755 - -
Lele04g0657 1794 SUPERFAMILY TRAF domain-like 516 657 - -
Lele04g0657 1794 ProSiteProfiles MATH/TRAF domain profile. 515 651 IPR002083 GO:0005515
Lele04g0657 1794 Pfam MATH domain 547 653 IPR002083 GO:0005515
Lele04g0657 1794 Pfam MATH domain 696 803 IPR002083 GO:0005515
Lele04g0657 1794 Pfam MATH domain 185 307 IPR002083 GO:0005515
Lele04g0657 1794 MobiDBLite consensus disorder prediction 1010 1047 - -
Lele04g0657 1794 ProSiteProfiles MATH/TRAF domain profile. 347 484 IPR002083 GO:0005515
Lele04g0657 1794 SUPERFAMILY TRAF domain-like 345 490 - -
Lele04g0657 1794 CDD MATH 516 651 IPR002083 GO:0005515
Lele04g0657 1794 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 312 IPR008974 GO:0005515
Lele04g0657 1794 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 505 660 IPR008974 GO:0005515
Lele04g0657 1794 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 342 490 IPR008974 GO:0005515
Lele04g0657 1794 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 674 809 IPR008974 GO:0005515
Lele04g0657 1794 Coils Coil 1489 1509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0657 Lele-ChrLele04 3953879 3962388 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0657 04 3953879 3962388 Lele28g0623 28 3971757 3975195 CCT
Lele04g0657 04 3953879 3962388 Lele04g0657 04 3953879 3962388 ECH
Lele01g0651 01 3806642 3814591 Lele04g0657 04 3953879 3962388 hybridization
Lele02g0639 02 3822301 3828569 Lele04g0657 04 3953879 3962388 hybridization