Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0481 ATGGCCTCCATTGAGGTAGACTACACGGTTGTCAAAGACGACAACGACGAATCACCGATCGAGGAGGTCCGTGTGACGGTACCCAACGACGATGACCCCACCCTACCGGTTTGGACATTCCGGATGTGGTTTCTGGGTCTCATCTCAGTGGCGCTCCTCTCCTTCATCAACACCTTCTTCCAGTACAGGGCTGAGCCCATGGTAGTCACCATGATCTCTGTTCAGGTCGCTACGCTTCCGATCGGCAAGTTCATGGCAAAGGTTCTGCCAACAACCAAGTTTCGAGTCCTCGGGTGGGAGTTCTCACTCAACCCGGGTCCGTTTAACGTGAAGGAGCACGTGCTCATCTCCATTTTCGCCAACGTCGCCGGCAACACTGCTTACGCCGTGAGTATCGTAAACATCATAAAGGCTTTTTACGGAAGAAAGATCCGTTTCGTCGCTGGTTGGTTCCTCGTCATCACAACGCAGGTTTTGGGCTATGGATGGGCTGGAATACTGAGGAAGTACGTCGTAGAGCCTGCGCACATGTGGTGGCCTTCTACTCTCGTCCAAGTCTCCTTGTTCAGGGCTTTACATGAAAAAGATCATAAGAGGATGTCACGCGGGAAATTCTTTTTAATAGCATTTGTATGCAGCTTTGCATGGTACGTTGTGCCAGGCTATCTTTTTCCGACACTATCAGCAATTTCATGGGTATGTTGGGCGTTTCCCAAATCCGTAACAGCCCAACAAATAGGCTCAGGCATGCAGGGACTTGGTTTGGGTGCTTTTGCCCTTGATTGGGCCGTTGTTTCTTCCTACCTTGAAAGCCCTCTCGTTTCCCCCTTCTTTGCAATCGCCAATGTCACCGTCGGTTACATCTTAGTCATCTACGTCATGATGCCGTTGGTGTATTGGGTTTTCAATGTCTATAATGCTAGGACCTTCCCTATCTACTCCAATGAACTCTTCGATTCCAAAGGTCTGCGATATAATGTCACCGCCATTGTCAATGACAATTTCCAGATTGATTTGGAGCAGTATGCCAAACAAGGTCGTGTGAATCTTAGTGTGTTCTTTGCTGTGACCTATGGCATCGGTTTTGCTGCTATTATTTCTACTTTGTCTCACGTCACCATTTTTAATGGCAGCGAGATATATAAACGATTCAGAGCTTCACGTACTGATCAAAACGAGGACATTCACACGAGATTGATGAAGAAGTATAAGGACATTCCCAACTGGTGGTTTTATGTGACTCTTGCAGTCTCATTTGTTCTTTCACTTGTACTCTGTATTTTCATGAAAAGCGAGGTACAATTACCTTGGTGGGCGCTCATCTTTGCAGCTGCGCTTGCTTTTATTTTCACTCTTCCCATCAGCATCATAAGGGCCACCACTAATCAGTTTCCAGGATTGAATATCATCACAGAGTACTTAATGGGTGTGATATCACCAGGCCAACCAATAGCCAACGTTTGCTTTAAGACCTACGGCTACATAAGTATGTACCAGGCTGTCTTCTTCTTAAGTGATTTCAAGCTAGGACATTACATGAAGATCCCCCCACGTTCCATGTTCATTGTTCAGATCATAGGGACTATAGTATCTGGAACCATCAACATTGGCGTGGCATGGTGGCTTCTGACTTCAATAAACGACATATGTCATGCGAACGCACTGCCTGCAAACAGTCCATGGACGTGTCCGAGTGATAACGTCTTCTTTGATGCGTCGGTGATTTGGGGTTTGGTTGGTCCAAAACGAATCTTCGGATCTCTTGGGAATTATGCGGCTCTGAACTGGTTCTTCCTTGTGGGTGCATTGGGACCATTATTAGTTTGGCTTCTTCAGAGAGCCTTCCCTAAGCAGAAATGGATCTCCCACATTCACTTTCCTGTGCTTCTCGGTGCAACGGCCATGATGCCACCGGCTAGTCCGGTCAACTTCAATTGTTGGATCGTTGTCGGGACCATCTTTAATTACTTCGTGTACAATTATCGTAAGAAGTGGTGGCAACGTTACAACTATGTTCTTTCAGCTGCTTTGGATGCTGGTACTGCTATCATGACGCTTCTTCTCTTCTTCACTCTCACCATGGAGAATAAGACCTTGAATTGGTGGGGTTCGTCTGGCGAGCACTGTGATCTCGCCACGTGTCCTACCGCCAAGGGTATAGCTGTTCCTGATTGTCCTGCATATTGA 2187 0.4701 MASIEVDYTVVKDDNDESPIEEVRVTVPNDDDPTLPVWTFRMWFLGLISVALLSFINTFFQYRAEPMVVTMISVQVATLPIGKFMAKVLPTTKFRVLGWEFSLNPGPFNVKEHVLISIFANVAGNTAYAVSIVNIIKAFYGRKIRFVAGWFLVITTQVLGYGWAGILRKYVVEPAHMWWPSTLVQVSLFRALHEKDHKRMSRGKFFLIAFVCSFAWYVVPGYLFPTLSAISWVCWAFPKSVTAQQIGSGMQGLGLGAFALDWAVVSSYLESPLVSPFFAIANVTVGYILVIYVMMPLVYWVFNVYNARTFPIYSNELFDSKGLRYNVTAIVNDNFQIDLEQYAKQGRVNLSVFFAVTYGIGFAAIISTLSHVTIFNGSEIYKRFRASRTDQNEDIHTRLMKKYKDIPNWWFYVTLAVSFVLSLVLCIFMKSEVQLPWWALIFAAALAFIFTLPISIIRATTNQFPGLNIITEYLMGVISPGQPIANVCFKTYGYISMYQAVFFLSDFKLGHYMKIPPRSMFIVQIIGTIVSGTINIGVAWWLLTSINDICHANALPANSPWTCPSDNVFFDASVIWGLVGPKRIFGSLGNYAALNWFFLVGALGPLLVWLLQRAFPKQKWISHIHFPVLLGATAMMPPASPVNFNCWIVVGTIFNYFVYNYRKKWWQRYNYVLSAALDAGTAIMTLLLFFTLTMENKTLNWWGSSGEHCDLATCPTAKGIAVPDCPAY 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0481 728 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 21 692 IPR004813 GO:0035673
Lele03g0481 728 Pfam OPT oligopeptide transporter protein 38 691 IPR004813 GO:0035673
Lele03g0481 728 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 16 696 IPR004648 GO:0055085
Lele03g0481 728 PANTHER ISP4 LIKE PROTEIN 12 726 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0481 Lele-ChrLele03 2780659 2783425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0481 1 728 Organic Solute Cotransporters AT1G09930 69.932 0.0 1097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0481 03 2780659 2783425 Lele21g1468 21 23085948 23088799 CCT
Lele03g0481 03 2780659 2783425 Lele22g1461 22 20432109 20435515 CCT
Lele03g0481 03 2780659 2783425 Lele23g0544 23 3980740 3983564 CCT
Lele03g0481 03 2780659 2783425 Lele24g1413 24 20142901 20146322 CCT
Lele03g0481 03 2780659 2783425 Lele03g0481 03 2780659 2783425 ECH
Lele01g0472 01 2777438 2780201 Lele03g0481 03 2780659 2783425 hybridization
Lele02g0457 02 2740003 2742988 Lele03g0481 03 2780659 2783425 hybridization