Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0388 ATGGCAGGGGGGGCCAAGAACAAGATGGAGAATGAAGTGCGTTGTGGTTTCATCGGGACGATTGTCCATCTCACAGGGTTTAAGCTGAGGAAATCGTCTCTTCATTCACTACCAATGAAGGCTAGCAACAATGTCCAGAATGATCAGAGCAAACCAGAGTCCAAGAAGCCAAATCTTGAATCCAAGGCTAATTCAACTGAGTCGCACAAACCGGCCAGAAAGAGCCCTTCCGATCATCGAACACCAGTTGCTACCATACGAAAGAACAAAAATCCGAGACCTTCAGACGCTGCAAGAAGCTCAACATCATCCTCTCTCAATTCTTCCCATACTAAGATAGAACAAAAGCACAAGTTGAATGATGATAGCAGAACACAGAGACAGCCTACTGAGAACTCGTTGGAGCTTGCTAGAGTGAGCACTCATTACCAGCGAGAGAACGAGAATAAATCCCCCCTCAAACTTAGTGGTAATTTGCTTGCAAATAACAGCCCAAGAACTAGAACTAGGGATCGCGAAAGTGTTCCCAAGAATAAAGACGTGATGAACTCAGCGCTCAAGTCTCACACTAACGCAAGTATAGGTGTAACGGGTAATATTATGAGGAAGAGCACCCATGAGCTTGCGCAGTTACGGAGTCCCAAGGACAGAGTAGACCCTGAAGTGTTGAAGACAATGGGAAACGAAGCATATAAGAAGGGAAGATTTGAAGAGGCTTTGTCTTTGTATGAGCGAGCGATTGCTGTTGATTCAAACAAGGCAACGTTCCATTGCAATAAGAGTGCAGCTTTGATAGGATTAGGCCGTCTTCTGGAAGCAATCGTTGAGTGCCAGGAAGCTATCCGGTTGGAACCTTCTTATAACAGACCCCATCACCGTTTGGCAACCATATATCTCAGATTGGGAGAAGCAGAAAAGGCACTAAGTTACATTGTCGCGACCCCATATTCTGATTCTGCACTAGCCTTCCAGGCTCAGTCTCTTCGCAATCACCTTCAGAAATGCATTGAAGCAAGGAAAATCAACGATTGGGACGCTATACTTAAGGAAACACAGTCTGCTATATCATTAGGTGCTGATTCAAGTCCTCAGGCTAGTCTCATTGATCTCAAACTCAATTGA 1122 0.451 MAGGAKNKMENEVRCGFIGTIVHLTGFKLRKSSLHSLPMKASNNVQNDQSKPESKKPNLESKANSTESHKPARKSPSDHRTPVATIRKNKNPRPSDAARSSTSSSLNSSHTKIEQKHKLNDDSRTQRQPTENSLELARVSTHYQRENENKSPLKLSGNLLANNSPRTRTRDRESVPKNKDVMNSALKSHTNASIGVTGNIMRKSTHELAQLRSPKDRVDPEVLKTMGNEAYKKGRFEEALSLYERAIAVDSNKATFHCNKSAALIGLGRLLEAIVECQEAIRLEPSYNRPHHRLATIYLRLGEAEKALSYIVATPYSDSALAFQAQSLRNHLQKCIEARKINDWDAILKETQSAISLGADSSPQASLIDLKLN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0388 373 Gene3D Tetratricopeptide repeat domain 200 337 IPR011990 GO:0005515
Lele03g0388 373 MobiDBLite consensus disorder prediction 111 125 - -
Lele03g0388 373 MobiDBLite consensus disorder prediction 41 176 - -
Lele03g0388 373 MobiDBLite consensus disorder prediction 95 110 - -
Lele03g0388 373 MobiDBLite consensus disorder prediction 53 85 - -
Lele03g0388 373 Pfam TPR repeat 227 262 - -
Lele03g0388 373 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Lele03g0388 373 SMART tpr_5 254 287 IPR019734 GO:0005515
Lele03g0388 373 SMART tpr_5 220 253 IPR019734 GO:0005515
Lele03g0388 373 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 364 IPR044534 -
Lele03g0388 373 MobiDBLite consensus disorder prediction 126 140 - -
Lele03g0388 373 SUPERFAMILY TPR-like 220 358 IPR011990 GO:0005515
Lele03g0388 373 MobiDBLite consensus disorder prediction 150 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0388 Lele-ChrLele03 2245518 2246762 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0333 25 2015570 2028159 Lele03g0388 03 2245518 2246762 CCT
Lele03g0388 03 2245518 2246762 Lele03g0388 03 2245518 2246762 ECH
Lele01g0379 01 2221318 2224135 Lele03g0388 03 2245518 2246762 hybridization
Lele02g0376 02 2192636 2195412 Lele03g0388 03 2245518 2246762 hybridization