Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0379 ATGGCAGGGAAGGCCAAGAACAAGATGGAGAATGAAGTGGGTTGTGGTTTCATCGGGACGATTTTCCATCTCACAGGATTCAAGCTGAGGAAATCGTCTGTTCATTCACTAGCCACGAAGGCTAGCAACAATGTCCAGAACGATCAGAGCAAATCAGAGTCCAAGAAGCCGCCAAATCCTGAATCCAAGGCTACTTCAACTGAGTCACACAAACCGGCCAGAAAGAGCCATTCCGATCATCGAACTCCAGTTGCTACCATACGAAAGAATCAAAACCCGATACCTTCAGACGGTGCAAGAAGCTCAACATCATCCTCTCGCAATTCTTCCCAAGCTAAGATTGAACAAAACCACAAGTTGAATGATGATAGCAGAACACAGAGACAGCCTACTCAGAACTCTTTGGAGCTTGCTAGAGTGAGCACTCATTACCAGCGAGAAAACGAGAATAAATCCCCCCTCAAACTTAGTGGTAATTTGCTTGCAAATAACAACCCAAGAACTAGAACTAGGGGTCGCGAAAGTGTTCCCAAGAACAAAGACGTGACGAACTCAGCGCTCAAGTCTCACACTAACGCAAGTATAGGTGTAACGGGGAATATTATGAGGAAGAGCACCGATGAGCTTGCGCAGTTACGGAGTCCCAAGAACAGAGTAGACCCTGAAGTGTTGAAGACAATGGGAAACGAAGCATATAAGCAAGGAAGATTTGAAGAGGCTTTGTCTTTGTATGAGCGAGCGATTGCTGTAGATTCAAACAAGGCAACGTTCCATTGCAATAAGAGTGCAGCTTTGATAGGATTAGGCCGTCTTCTGGAAGCAATCGTTGAGTGCCAGGAAGCTATCCGGTTGGAACCTTCTTATAACAGACCCCATCACCGTTTGGCAACCATATATCTCAGATTGGGAGAAGCAGAAAAGGCACTAAGTTACAATGTCGCAACCCCATATTCTGATTCTTCACTCGCCTTCCAAGCTCAGTCTCTTCGCAATCACCTTCAGAAATGCGTTGAAGTAAGGAAAATCAACGATTGGGACGCTATACTTAAGGAAACACATTCTGCTATATCATTAGGTGCTGATTCAAGTCCTCAGATTTATGCGTTGCAAACAGAAGCCTTACTTAAGCTCTTCAGACATCAAGAGGCATATGCTACCTATGAGAAAATGCCCAAATTTGCTATTAATTGGTGCACCAAGTTATTTGGTCTGGCTCGTACTGCTTATCTGTTTATGATAGGCGCGCAGGCTTACTTGGCAACTGGCAGGTTCGAGGATGCTGTGACCGCAGCTGAGCAAGCAGCTAAACTTGATCCAAGCGACAAAGAGGTGAGTGCAATGGTAAAGAGGGCCAGAGAAATGTCATCAGCCAGAATAACTGGAAACTCACTGTTTAAGGCATCCAAATATACAGAAGCATGTGCAGTATACAACGAAGGACTAGAACACGACCCATACAACTCAGTTCTCCTATGCAACAGAGCAGCATGTCGTTCTAAGCTGGGCCAATTTGAGAAAGCCATTGAAGATTGCAATGCAGCCCTTGCACTTCAGCCTAGGTATAGCAAGGCACGGTTAAGGAGGGCACATTGCAATGCCAAATTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGCTATTGAGAGAAAAGTCAGGGGACGAGGAGATGGGCAGGGCTCTGTTTGAGGCTCAGCTTCAACTCAAGATACTGCATGGAGAAGATGTCAAGGACTTCAAATTTGGGTGTAATTTGGTTTTTGTATCGAGCAATGATCGGTTTCGACATTATGTAACCTCACCTGGTATTTCTGTGGTGCTATTTTGCAACAAGGCAACCCCCAAGCAAATATTGCTAGTGTTGGAGCAAACCTGCAAGAGATTTCCGTCTGTTAATTTCCTCAAGGTGGAAATTGAAGACCACCCCTACATAGCGAAATCAGAAGGAGTGAGCTCTGTGCCAGCATTCAAAATATACAAGAATGGATCAAAGGTTAAGGAAATTCCAGGCAACAATCACGAGTTGTTAGAAAGATCGGTTAAATTGTATAGCAGTTGA 2061 0.4464 MAGKAKNKMENEVGCGFIGTIFHLTGFKLRKSSVHSLATKASNNVQNDQSKSESKKPPNPESKATSTESHKPARKSHSDHRTPVATIRKNQNPIPSDGARSSTSSSRNSSQAKIEQNHKLNDDSRTQRQPTQNSLELARVSTHYQRENENKSPLKLSGNLLANNNPRTRTRGRESVPKNKDVTNSALKSHTNASIGVTGNIMRKSTDELAQLRSPKNRVDPEVLKTMGNEAYKQGRFEEALSLYERAIAVDSNKATFHCNKSAALIGLGRLLEAIVECQEAIRLEPSYNRPHHRLATIYLRLGEAEKALSYNVATPYSDSSLAFQAQSLRNHLQKCVEVRKINDWDAILKETHSAISLGADSSPQIYALQTEALLKLFRHQEAYATYEKMPKFAINWCTKLFGLARTAYLFMIGAQAYLATGRFEDAVTAAEQAAKLDPSDKEVSAMVKRAREMSSARITGNSLFKASKYTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALALQPRYSKARLRRAHCNAKLERWEAAIQDYEMLLREKSGDEEMGRALFEAQLQLKILHGEDVKDFKFGCNLVFVSSNDRFRHYVTSPGISVVLFCNKATPKQILLVLEQTCKRFPSVNFLKVEIEDHPYIAKSEGVSSVPAFKIYKNGSKVKEIPGNNHELLERSVKLYSS 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0379 686 Pfam Tetratricopeptide repeat 415 488 - -
Lele01g0379 686 Gene3D Glutaredoxin 584 685 - -
Lele01g0379 686 Pfam Thioredoxin 616 677 IPR013766 -
Lele01g0379 686 MobiDBLite consensus disorder prediction 126 141 - -
Lele01g0379 686 SUPERFAMILY TPR-like 221 443 IPR011990 GO:0005515
Lele01g0379 686 SUPERFAMILY Thioredoxin-like 584 678 IPR036249 -
Lele01g0379 686 Coils Coil 535 555 - -
Lele01g0379 686 MobiDBLite consensus disorder prediction 151 170 - -
Lele01g0379 686 CDD TRX_family 595 673 - -
Lele01g0379 686 Pfam Tetratricopeptide repeat 490 521 IPR001440 GO:0005515
Lele01g0379 686 MobiDBLite consensus disorder prediction 67 84 - -
Lele01g0379 686 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 682 IPR044534 -
Lele01g0379 686 MobiDBLite consensus disorder prediction 38 180 - -
Lele01g0379 686 Pfam TPR repeat 228 263 - -
Lele01g0379 686 ProSiteProfiles TPR repeat profile. 408 441 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 488 521 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 255 288 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 221 254 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 454 487 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 522 555 IPR019734 GO:0005515
Lele01g0379 686 SMART tpr_5 408 441 IPR019734 GO:0005515
Lele01g0379 686 MobiDBLite consensus disorder prediction 38 66 - -
Lele01g0379 686 Gene3D Tetratricopeptide repeat domain 219 572 IPR011990 GO:0005515
Lele01g0379 686 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Lele01g0379 686 MobiDBLite consensus disorder prediction 85 115 - -
Lele01g0379 686 SUPERFAMILY TPR-like 460 570 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0379 Lele-ChrLele01 2221318 2224135 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0333 25 2015570 2028159 Lele01g0379 01 2221318 2224135 CCT
Lele01g0379 01 2221318 2224135 Lele01g0379 01 2221318 2224135 ECH
Lele01g0379 01 2221318 2224135 Lele03g0388 03 2245518 2246762 hybridization
Lele01g0379 01 2221318 2224135 Lele04g0383 04 2292120 2294888 hybridization