Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g0376 ATGTCAGGGAAGGCCAAGAACAAGATGGAGAATGAAGTGGGTTGTGGTTTCATCGGGAAGATTTTCCATCTTGCAGGCTTTAAGCTGAGGAAATCATCTGTTCATTCACTACCCATGAAGGCTAGCAACAATGTCCAGAACGAGCATAACAAAACCGAGTCCGAGAAGCCGCCAAATCCAGAATCCCGGGCTACTTCAACTGAGTCGCACAAACCGGCCAGAAAGACCCCTTCCGATCATCGAACACATCCTGCCATCCGAAAGAATCAAAATCCAAGACCTTCAGATGCGGCAAGAAGCACAACATCATCCTCTCGCAATTCATCCCAAACTACGATTCATCAAAAGCACAAGTTGAGTCACGATAGCAGAACACAGAGACAGCCTACTGAGAACTCTTTGGAGCTTGCTAGAGTAAGCACTCATTACCCGCGAGAGAACGAGAATAAACCCCCCCTCAAACTTACTGGTAATTTGGTTGCAAATAACAGCCCAAGAACTAGAACTAGGAGTCGCGAAAGTGTTCCTAAGAATAAAGACGTTATGAACTCAGCGCGCAAGTCTCAAACTCACGCAAGTATAGGTGTAACGGGGAATATTATGAGGAAGAGCACCGATGAGCTTGCGCAGTTATGGAGTCCCACGAACAGAGTAGACCCTGAAGTGTTGAAGACAATGGGAAACGAAGCGTATAAGCAAGGAAGATTGGAAGAGGCTTTGTCTCTGTATGAACGAGCGATAGCCGTTGATTCAAATAAAGCGACTTTTCATTGCAATAAGAGTGCAGCTTTGATAGGATTAGGCCGTCTTCTGGAAGCAATTGTTGAGTGCCAAGAAGCTATCCGGTTGGAACCTTCGTACAACAGACCCCATCACCGTTTGGCAACCATATATCTCAGATTGGGAGAAGCAGAAAAGGCACTTAGTTACAATGTCGCAACCCCATGTGCTGATTCAAGTCCTCAGGTTTATGCGTTGCAAACAGAAGCCTTACTTAAGCTCTTCAGACATCAAGAGGCATATGCTACCTACGAGAAAATGCCCAAATTTGCTATTAACTGGTGCACCAAGTTATTTGGTCTGGCTCGTACTGCTTATCTGTTTATGATAGGCACGCAGGCTTACTTGGCAGCAGGCAGGTTTGAGGATGCGGTGACAGCTGCTGAGCAAGCAGCTAAACTTGATCCAAGCGACAAAGAGGTGAGTGCAGTGGTAAAGAGGGCCAGAGCAATGTCATCAGCCAGAATAACTGGAAACTTACTGTTCAAGGCATCCAAATATACAGAAGCATGTGCAGTATACAACGAAGGACTAGAGCACGATCCATACAACTCAGTTCTCCTTTGCAACAGAGCAGCATGTCGTTCTAAGTTGGGCCAATTTGAGAAAGCGATTGAAGATTGTAATGCGGCCCTTGCAGTTCAGCCTAGTTATAGAAAGGCAAGGTTAAGGAGGGCAAATTGCCATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAATGCTATTGAGAGAAAAGCCGGGGGATGAGGAGGTGGGCAGGGATCTGTTTGAGGCTCAGCTTCAACTCAAGATGCTGCGTGGGGTAGATGTTAAGGACTTCAAATTTGGTTGTAATCTGGTTTTTGTATCGAGCAATGATCGGTTTCGACATTATGTAACCTCACCTGGTATGTCTGTGGTGCTGTTCTGCAACAAGGCAACCCACAAGCAAGCATTGCTAATGTTGGAGCAAACCTGCAAGAGATTTCCGTCTGTTAATTTCCTCAAGGTGGAAATTGAAGAGCACCCCTACATAGCGAAATCAGAAGGCGTGAGCTCTGTGCCAGCATTCAAAATATACAAGAATGGATCAAAGGTTGAGGAAATTCCAGGCAACAATCACGAGTTGTTAGAAAGATCGGTTAAATTGTATAGCAGCTGA 1932 0.4555 MSGKAKNKMENEVGCGFIGKIFHLAGFKLRKSSVHSLPMKASNNVQNEHNKTESEKPPNPESRATSTESHKPARKTPSDHRTHPAIRKNQNPRPSDAARSTTSSSRNSSQTTIHQKHKLSHDSRTQRQPTENSLELARVSTHYPRENENKPPLKLTGNLVANNSPRTRTRSRESVPKNKDVMNSARKSQTHASIGVTGNIMRKSTDELAQLWSPTNRVDPEVLKTMGNEAYKQGRLEEALSLYERAIAVDSNKATFHCNKSAALIGLGRLLEAIVECQEAIRLEPSYNRPHHRLATIYLRLGEAEKALSYNVATPCADSSPQVYALQTEALLKLFRHQEAYATYEKMPKFAINWCTKLFGLARTAYLFMIGTQAYLAAGRFEDAVTAAEQAAKLDPSDKEVSAVVKRARAMSSARITGNLLFKASKYTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALAVQPSYRKARLRRANCHAKLERWEAAIQDYEMLLREKPGDEEVGRDLFEAQLQLKMLRGVDVKDFKFGCNLVFVSSNDRFRHYVTSPGMSVVLFCNKATHKQALLMLEQTCKRFPSVNFLKVEIEEHPYIAKSEGVSSVPAFKIYKNGSKVEEIPGNNHELLERSVKLYSS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g0376 643 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 316 639 IPR044534 -
Lele02g0376 643 Pfam Tetratricopeptide repeat 447 478 IPR001440 GO:0005515
Lele02g0376 643 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 411 444 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 364 398 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 479 512 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 254 287 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 220 253 IPR019734 GO:0005515
Lele02g0376 643 SMART tpr_5 445 478 IPR019734 GO:0005515
Lele02g0376 643 Gene3D Tetratricopeptide repeat domain 219 310 IPR011990 GO:0005515
Lele02g0376 643 MobiDBLite consensus disorder prediction 93 114 - -
Lele02g0376 643 Pfam Tetratricopeptide repeat 374 445 - -
Lele02g0376 643 SUPERFAMILY TPR-like 225 515 IPR011990 GO:0005515
Lele02g0376 643 Pfam TPR repeat 227 262 - -
Lele02g0376 643 Gene3D Glutaredoxin 542 642 - -
Lele02g0376 643 Gene3D Tetratricopeptide repeat domain 311 530 IPR011990 GO:0005515
Lele02g0376 643 Pfam Tetratricopeptide repeat 481 509 IPR019734 GO:0005515
Lele02g0376 643 Pfam Thioredoxin 578 634 IPR013766 -
Lele02g0376 643 MobiDBLite consensus disorder prediction 38 190 - -
Lele02g0376 643 SUPERFAMILY Thioredoxin-like 544 629 IPR036249 -
Lele02g0376 643 ProSiteProfiles TPR repeat profile. 220 253 IPR019734 GO:0005515
Lele02g0376 643 CDD TRX_family 552 630 - -
Lele02g0376 643 MobiDBLite consensus disorder prediction 67 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g0376 Lele-ChrLele02 2192636 2195412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g0376 232 520 Glycosyltransferase AT3G04240 22.635 1.77e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0333 25 2015570 2028159 Lele02g0376 02 2192636 2195412 CCT
Lele02g0376 02 2192636 2195412 Lele02g0376 02 2192636 2195412 ECH
Lele02g0376 02 2192636 2195412 Lele03g0388 03 2245518 2246762 hybridization
Lele02g0376 02 2192636 2195412 Lele04g0383 04 2292120 2294888 hybridization