Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01637 ATGGAGCAGGGTGGCAGAGAAGACCAGACAACCACCTTCAACAAATATGCTTTTGCTTGTGCTATAGTTGCTTCAATGGTTTCCATCATCTCTGGTTATGATACTGGTGTTATGAGTGGAGCCCTGATATTCATCAAGGATGATATTGGAATCAGCGATACCCAACAAGAGGTTCTGGCAGGAATCTTGAACCTATGCGCATTGGTAGGATCCTTAGCTGCTGGAAGAACCTCTGATTACATTGGTCGTCGCTACACAATTTTGTTAGCCTCCGTCCTCTTCATGGTGGGTGCAGTTCTGATGGGGTATGGTCCAAACTACGCAATATTAATGGTTGGAAGGTGTGTTGGTGGTGTGGGTGTGGGCTTTGCTCTGATGATAGCACCGGTTTACACAGCAGAGATTTCCTCTGCATCATCCAGGGGCTTTCTAACCTCTTTGCCCGAGCTTTGTATCGGCATTGGCATCTTACTTGGCTACATATCAAACTTCTTCTTGGGAAAATTGACCTTGAAGCTTGGATGGAGGTTGATGCTTGGTGTTGCTGCACTTCCTTCACTCACTTTGGCTTTGGTCATTCTAGCAATGCCAGAGTCGCCAAGGTGGTTAGTGATGCAGGGTCGTTTGGAAGGTGCGAAGAAGGTGCTACTGAAAGTTTCAAATACCACACAAGAGGCCGAACTTCGTTTCAGGGAAATAAAAGCAGCTGTAGGGTTTGATGAGAACTGTGGCGTTGGTGAGAGTGTGAAGGTCCCTGAGAAGTCACAGGGTGAAGGGGTTTGGAAAGAGTTGCTTGTGAGGCCCACACCGGAAGTTCGTTGGATGCTGATAGCAGCAGTTGGGATTCATTTTTTCGAGCATGCAACTGGCATTGAAGCTGTGATGTTGTACAGTCCCAGAATCTTTAAAAAAGCTGGTGTGAGAAGCAAGGATAAGCTCTTGCTTGCAACTGTTGGAATTGGTCTGACAAAGATAGTTTTCTTGGTGATGGCTTTGTTTTTGCTTGACAAAGTTGGTAGAAGGCGGCTCTTGCAAGTCAGCGTTGGGGGAATGATTTGTGGGCTCACACTTTTGGGTTTTAGTTTGACCATGGTTGATCATTCCAGTGAAAAGGTGTTGTGGGCATTGGGCCTTAGCATTGTGGCCACATATGCTTATGTTGCTTTCTTTAACATCGGGCTTGGGCCTGTGACATGGGTCTACAGCTCTGAGATATTCCCTTTGAAGTTGAGGGCCCAAGGTGCGAGTATAGGAGTTGCAGTGAACAGAACTATGAATGCTGTGGTTTCCATGAGTTTTATTTCAGTCTACAAAACAATCACTATTGGTGGAAGCTTTTTCATGTTCGCTGCTGTATCTATACTAGCTTGGTTCTTCTTTTACTTTTTCCTACCTGAAACCAAAGGCGTGCCCTTGGAAGAGATGGAAATGGTTTTTACCAAAAAATCCAACCCTAAAAATGTCGTAAACAAAACTTATCCTAGATAG 1488 0.4516 MEQGGREDQTTTFNKYAFACAIVASMVSIISGYDTGVMSGALIFIKDDIGISDTQQEVLAGILNLCALVGSLAAGRTSDYIGRRYTILLASVLFMVGAVLMGYGPNYAILMVGRCVGGVGVGFALMIAPVYTAEISSASSRGFLTSLPELCIGIGILLGYISNFFLGKLTLKLGWRLMLGVAALPSLTLALVILAMPESPRWLVMQGRLEGAKKVLLKVSNTTQEAELRFREIKAAVGFDENCGVGESVKVPEKSQGEGVWKELLVRPTPEVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVRSKDKLLLATVGIGLTKIVFLVMALFLLDKVGRRRLLQVSVGGMICGLTLLGFSLTMVDHSSEKVLWALGLSIVATYAYVAFFNIGLGPVTWVYSSEIFPLKLRAQGASIGVAVNRTMNAVVSMSFISVYKTITIGGSFFMFAAVSILAWFFFYFFLPETKGVPLEEMEMVFTKKSNPKNVVNKTYPR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01637 495 SUPERFAMILY MFS general substrate transporter 8 476 IPR036259 -
Lapu3g01637 495 Gene3D MFS general substrate transporter like domains 9 484 IPR036259 -
Lapu3g01637 495 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 13 483 IPR045262 GO:0015144
Lapu3g01637 495 ProSitePatterns Sugar transport proteins signature 1. 74 91 IPR005829 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 NCBIfam sugar porter family MFS transporter 14 475 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 Pfam Sugar (and other) transporter 20 479 IPR005828 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 ProSiteProfiles Major facilitator superfamily (MFS) profile. 20 468 IPR020846 GO:0022857
Lapu3g01637 495 FunFam probable polyol transporter 4 10 482 - -
Lapu3g01637 495 ProSitePatterns Sugar transport proteins signature 2. 116 141 IPR005829 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 PRINTS Sugar transporter signature 403 415 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 PRINTS Sugar transporter signature 28 38 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 PRINTS Sugar transporter signature 111 130 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 PRINTS Sugar transporter signature 286 296 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 PRINTS Sugar transporter signature 380 401 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lapu3g01637 495 ProSitePatterns Sugar transport proteins signature 1. 331 347 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01637 Lapu-Chr3 21231652 21233911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01637 7 479 Organic Solute Cotransporters AT2G18480 71.789 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01637 - - var:108328789 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01637 3 21231652 21233911 Lapu2g00657 2 5763926 5771799 ECH
Lapu3g01637 3 21231652 21233911 Lapu3g01637 3 21231652 21233911 ECH
Lapu2g00655 2 5740835 5742466 Lapu3g01637 3 21231652 21233911 PCT
Lapu3g01637 3 21231652 21233911 Lapu2g00656 2 5763863 5771799 PCT