Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g1116 ATGTCAGGGAAGGTTAAGAACAACAAGGTGGGGAATGAATTGGGTTGTGGTTTCATGAGTAGAATTCTCCAACTCAAAAGCTATAAGCTTAGGACATCTTCTGTTCATTCACTACCCATGAAGCCTAGCAACAATGCACCACAGAAAGATCATGTAAAAAATGAACCTCAAATTTCTCCAAATGATGAATCAAAGGTTCTTCAAAGAAGCTCCAAAAAACCTGCCAGAAAGGTCACTTTTATTGATCAAAATAAAAAACATTCAGACACTGCAAGAAACTCAACATCAACATCATCATCATCAACAACTCACACAAAAGTTGAACAAAACAAAGACACTACTGATGAGAGAAAGCCCAATGGAAACTCTTTGCAACTTGCTAGAATAAGCACTAGTCATCAGAGCGACAATGAGAGCAACAAGTCCCCAGTGAAAGAATTTGGTGCCTTGAAACTCACTGGGAATTTACTTGTAAACAACACACCAAGAAGAAAAAGTGTGGAATTTGTTCCTAAGAATAAAGATATCAACTCTATTTTCAGTTCTTATAGTAACCCTGGCAAGGTCATGATGGGTAATATCATAAGGGGGAACAGTGATGACCTTGCACAGTTTAGAAGTTCAAAGAACAACAAAGTGGACCCTGAAGTGTCGAAGTCCATTGGAAATGAAGCATACAAGCAGGGAAAATTTGAAGAGGCTTTGGCTTTGTATGACAAAGCCATTGCTATTGATTCAAATAAGGCAACATATCATTGCAACAAGAGTGCAGCTTTGATTGGCTTATCAAGGTTTCAGGAAGCAATTGTTGAGTGTCAAGAATCTATCCGGCTTGAACCTTCTTATCACAGAGCTTATAACCGTTTGGCAACAATATATTTCAGATTGGGTGAAGCAGAAAAGGCAGTGGATTGCATTAACTCAACCCCATGCCCTGATTCCTTACTCGCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAACAAATGCAATGAAGCTCGAAAAGCCGGTGAATGGAGTGTTATACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCAGCACCACAGGTATATGCTTTAAAAACTGAAGCCTTGCTGAAGCTCTTAAGATATCAGGAGGCACATGCCACCTACGAGAAAATGCCGCAGTTTTCAGTTGATTGGTGTAACAATATATTTGGCCTGGCTCATAGTGCTTACCTATTGATTATAGGCGCACAGGTTCACTTGGCAGCTGGAAGGTTTGAGGATGCTGTGAAAGCAGCTCAGCAAGCAGCAAAAGCTGATCCAAGCAGCATAGATGTAAATGTAGTTTTAAGGAGGACCAGAGCAGCGACATCGGCTAGAATGAATGGAAACTTGCTCTTCAAGGCATCAAAATTCATGGAAGCATGTTCCGCATACAATGAAGGACTAGAGCATGATCCACACAATTCAGTTCTGATATGCAACAGAGCAGCATGTCGATCTAAGTTAGGCCAATATGAGAAAGCAATTGAAGATTGTAATGCAGCTCTTAAAGTTCAACCATGTTATAGCAAAGCAAGATTAAGGAGGGCAGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCTATTCAAGACTATGAATTGCTATTAAGAGAAAAGCCAGGGGATGAGGAAGTAGCCAAGGCTTTGTTCGAGGCCCAGCTCCAACTCAAGATGTTACGCGGAGAAGATGTCAAGGACTTGAAATTCGGTTCAAATTTGCTTTTCATCTCTACAAATGATCGGTTCCGACATTATGTAACTTTACCTGGGATGACAGTGGTCCTCTTTAGCAACAAGACAACCAACAAAGAAGTATTGCTGATGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCTTACTTAGCGAAATCGGAAGGTGTGAGCTCTATCCCAACCTTCAAAATATACAAGAACGGATCAAGGGTAAAAGAAATTTCTGGAAAAAACGAGTCGTTAGAAAGATCAGTTATATTGTATAGCAGCTGA 2040 0.4059 MSGKVKNNKVGNELGCGFMSRILQLKSYKLRTSSVHSLPMKPSNNAPQKDHVKNEPQISPNDESKVLQRSSKKPARKVTFIDQNKKHSDTARNSTSTSSSSTTHTKVEQNKDTTDERKPNGNSLQLARISTSHQSDNESNKSPVKEFGALKLTGNLLVNNTPRRKSVEFVPKNKDINSIFSSYSNPGKVMMGNIIRGNSDDLAQFRSSKNNKVDPEVSKSIGNEAYKQGKFEEALALYDKAIAIDSNKATYHCNKSAALIGLSRFQEAIVECQESIRLEPSYHRAYNRLATIYFRLGEAEKAVDCINSTPCPDSLLAFQAQALQNHLNKCNEARKAGEWSVILKETQSAISLGADSAPQVYALKTEALLKLLRYQEAHATYEKMPQFSVDWCNNIFGLAHSAYLLIIGAQVHLAAGRFEDAVKAAQQAAKADPSSIDVNVVLRRTRAATSARMNGNLLFKASKFMEACSAYNEGLEHDPHNSVLICNRAACRSKLGQYEKAIEDCNAALKVQPCYSKARLRRADCNAKLERWEAAIQDYELLLREKPGDEEVAKALFEAQLQLKMLRGEDVKDLKFGSNLLFISTNDRFRHYVTLPGMTVVLFSNKTTNKEVLLMLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVSSIPTFKIYKNGSRVKEISGKNESLERSVILYSS* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g1116 679 Pfam Tetratricopeptide repeat 409 481 - -
Lan9g1116 679 MobiDBLite consensus disorder prediction 90 107 - -
Lan9g1116 679 SUPERFAMILY Thioredoxin-like 568 668 IPR036249 -
Lan9g1116 679 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 675 - -
Lan9g1116 679 MobiDBLite consensus disorder prediction 66 89 - -
Lan9g1116 679 Pfam Tetratricopeptide repeat 486 513 IPR001440 GO:0005515
Lan9g1116 679 Pfam Thioredoxin 615 668 IPR013766 -
Lan9g1116 679 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 675 IPR044534 -
Lan9g1116 679 MobiDBLite consensus disorder prediction 34 123 - -
Lan9g1116 679 Gene3D Tetratricopeptide repeat domain 214 567 IPR011990 GO:0005515
Lan9g1116 679 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Lan9g1116 679 MobiDBLite consensus disorder prediction 34 65 - -
Lan9g1116 679 Pfam Tetratricopeptide repeat 284 306 IPR019734 GO:0005515
Lan9g1116 679 Coils Coil 522 542 - -
Lan9g1116 679 Gene3D Glutaredoxin 582 676 - -
Lan9g1116 679 SUPERFAMILY TPR-like 215 437 IPR011990 GO:0005515
Lan9g1116 679 SMART tpr_5 516 549 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 249 282 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 448 481 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 283 310 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 482 515 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 402 435 IPR019734 GO:0005515
Lan9g1116 679 SMART tpr_5 215 248 IPR019734 GO:0005515
Lan9g1116 679 CDD TRX_family 615 665 - -
Lan9g1116 679 Pfam TPR repeat 222 254 - -
Lan9g1116 679 SUPERFAMILY TPR-like 453 564 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g1116 Lan-Chr9 18519604 18523045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g1116 K09527 - gmx:100791862 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0471 11 3563955 3565705 Lan9g1116 9 18519604 18523045 LSH
Lan9g1116 9 18519604 18523045 Lan15g0848 15 17695087 17699169 PCT
Lan9g1116 9 18519604 18523045 Lan14g0649 14 13430476 13445586 PCT
Lan15g0848 15 17695087 17699169 Lan9g1116 9 18519604 18523045 PCT
Lan14g0649 14 13430476 13445586 Lan9g1116 9 18519604 18523045 PCT