Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0848 ATGGCAGAGAAGGTCAATAACAAGGTGGGAATTGACTTAGGGTGTGGTTTTGTGGAGAGAATTCTTCACCTTAAAAGCAATAGGCTGAAAAAATCATCCATTCATTCACTACCTGTGAAGGGTAGCAACAATGCACAACATGCCGAAAAAGAATCTAACAAGCCTTCAGATCATGAAACAAAGGTTCCAAGAAACAGCATCACTAAAACTGTTCCAAATGATTCACCTGACACAGTTAAAGTGGATCAGAAACCTGCAAGAAAGAGCAACTATAGTAGTCATGGAGCACCACCTTCTTCTGCATACCGAAACAACGGCCAAAAACCAAGACCTTCAGATGCTGCTAGAAGCTCAACATCATCATCTTCTGGCAACTCAAGCCATACAAAGGTTCAATTTCAACAGCACCATGATTCAAGTGATGAAAGCAAGCAACAAAGAGAACCTAATGGTAGTTCTCTTCAACTTGCAAGGATAAGTACTAGTCACCAAAAAGACAATGAAAGCAAATCACCATCCAAAGAGTTATGTGCCTTGAAACTCACAGGGAACTTGATTATGAATAACAGTCCAAGAAATAGTGTTACCAAAAGCATGGAATTTGTTCCTAAGAATAAAGAGTTGAACTCTATGTCCCCTTGTTATAGTCATGCTAACAAAGCCTTAATGGGGAACATCATGAGGAGGAACGGCGATGAGGTTGCGCAGTTCCGAAGCCCAAGGAATAGAGTAGATCCCGAGGTTTTGAAGTCCATGGGGAATGAAGCATACAACAAGGGAAGATTTGAAGAGGCTTTGGTTTTGTATGACCGAGCCATTAGTCTTGACTCCAATAAGGCAATTTATCACTGCAATAAGAGTGCAGCCTTAATTGGCTTGGGAAAGTTTCTTCAAGCAATTGTTGAGTGTGAGGAAGCTATTAGGTTGGAACCTTCATATGGTAGAGCCCACAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCTGAAAAGGCACTGAATTGCAATCAAGCAACCCCAGATGTTGATCCTGAACTGACTTTCCATGCTGAGGCTCTTCAAAGTCACCTTAACAAATGCACCGAAGCTCGGAAATTCAATGACTGGAAAGTTGTACTAAAAGAAACACATTCTGCAATATCCCTTGGTGCTGATTCAGCTGCACAGGTCTATGCTTTACAAACTGAAGCCTTGTTGAAGCTCCTAAGACATCAAGAGGCATATGCCACCTATGAAAAAATGCCGAAATTTGACCGTGATTCTTGTAACAAGTTATTTGGTCCGGCTTGTAGTGCTTACCTTTTGATGATAGACGCACAAGTTTACTTGGCAGCCGGCAGATTTGAAGATGCTGAGGCAGTATCCAAGCAAGCAGCTAAACTTGATCCAAGCAACAGCGAGGTGAACACAGTGGTAAGGAGGGCCAGAGCAGCGGCATCAGCAAGAATAAGTGGTAACTTGCTCTTCAAGGCATCGAAATTCACGGAAGCATATGCAGTATACAATGAAGGACTAGAACATGATCCATACAATTCAGTTCTTCTATGCAATAGGGCAGCGTGTCGATCTAAGCTAGGCCAATTTGAGAAAGCAATTGAAGATTGCAATGCAGCTCTTGTAATTCAGCCTAGTTATAGCAAGGCAAGGTTGCGCAGGGCAAATTGCAATGCTAAGTTGGAAAGATGGGAAGCTGCTATTCAAGACTATGAAATGCTAATAGGAGAAAAGCCAGGGGATGAGGAGGTAGCCAGGGCTTTATTTGAGGCTCAGCTACAACTCAAGATGCTGCGCGGCGAAGATATTAAGGACTTAAAATTCGGCTCAAATTTGTTTTTCATCTCGAGCAATGATCGGTTTAGACATTATGTAACATCACCTGGTATGTCTGTGGTGCTCTTTTGCAACAAGACAACCCACAAGCAAGTATTGCTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCAATTAATTTCCTTAAGGTGGAGATTGAAGACCACCCCTACTTGGCCAAATCAGAAGGAGTGAGTTCTATTCCATCCTTCAAAATATACAAGAATGGATCAATTGTTAAAGAAATTCCAGGAAACAGCCATGAGTTGTTAGAAAGATCAGTTAAATTATATAGCAGCTAA 2136 0.4185 MAEKVNNKVGIDLGCGFVERILHLKSNRLKKSSIHSLPVKGSNNAQHAEKESNKPSDHETKVPRNSITKTVPNDSPDTVKVDQKPARKSNYSSHGAPPSSAYRNNGQKPRPSDAARSSTSSSSGNSSHTKVQFQQHHDSSDESKQQREPNGSSLQLARISTSHQKDNESKSPSKELCALKLTGNLIMNNSPRNSVTKSMEFVPKNKELNSMSPCYSHANKALMGNIMRRNGDEVAQFRSPRNRVDPEVLKSMGNEAYNKGRFEEALVLYDRAISLDSNKAIYHCNKSAALIGLGKFLQAIVECEEAIRLEPSYGRAHNRLATIYFRLGEAEKALNCNQATPDVDPELTFHAEALQSHLNKCTEARKFNDWKVVLKETHSAISLGADSAAQVYALQTEALLKLLRHQEAYATYEKMPKFDRDSCNKLFGPACSAYLLMIDAQVYLAAGRFEDAEAVSKQAAKLDPSNSEVNTVVRRARAAASARISGNLLFKASKFTEAYAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNAALVIQPSYSKARLRRANCNAKLERWEAAIQDYEMLIGEKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKTTHKQVLLVLEQTCKRFPSINFLKVEIEDHPYLAKSEGVSSIPSFKIYKNGSIVKEIPGNSHELLERSVKLYSS* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0848 711 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Lan15g0848 711 CDD TRX_family 620 707 - -
Lan15g0848 711 Pfam Tetratricopeptide repeat 440 513 - -
Lan15g0848 711 SUPERFAMILY Thioredoxin-like 596 700 IPR036249 -
Lan15g0848 711 Gene3D Glutaredoxin 607 710 - -
Lan15g0848 711 SUPERFAMILY TPR-like 484 595 IPR011990 GO:0005515
Lan15g0848 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 710 IPR044534 -
Lan15g0848 711 Pfam Tetratricopeptide repeat 515 546 IPR001440 GO:0005515
Lan15g0848 711 ProSiteProfiles TPR repeat profile. 433 466 IPR019734 GO:0005515
Lan15g0848 711 Coils Coil 553 573 - -
Lan15g0848 711 Pfam Thioredoxin 641 700 IPR013766 -
Lan15g0848 711 MobiDBLite consensus disorder prediction 33 173 - -
Lan15g0848 711 SUPERFAMILY TPR-like 246 469 IPR011990 GO:0005515
Lan15g0848 711 Pfam TPR repeat 253 288 - -
Lan15g0848 711 MobiDBLite consensus disorder prediction 146 162 - -
Lan15g0848 711 SMART tpr_5 547 580 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 246 279 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 513 546 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 280 313 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 314 347 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 479 512 IPR019734 GO:0005515
Lan15g0848 711 SMART tpr_5 433 466 IPR019734 GO:0005515
Lan15g0848 711 MobiDBLite consensus disorder prediction 85 133 - -
Lan15g0848 711 Gene3D Tetratricopeptide repeat domain 244 598 IPR011990 GO:0005515
Lan15g0848 711 MobiDBLite consensus disorder prediction 33 49 - -
Lan15g0848 711 MobiDBLite consensus disorder prediction 50 64 - -
Lan15g0848 711 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0848 Lan-Chr15 17695087 17699169 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0848 K09527 - gmx:100814381 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0848 15 17695087 17699169 Lan14g0649 14 13430476 13445586 LSH
Lan11g0471 11 3563955 3565705 Lan15g0848 15 17695087 17699169 PCT
Lan9g1116 9 18519604 18523045 Lan15g0848 15 17695087 17699169 PCT
Lan15g0848 15 17695087 17699169 Lan11g0471 11 3563955 3565705 PCT
Lan15g0848 15 17695087 17699169 Lan9g1116 9 18519604 18523045 PCT