Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g1761 ATGGCATTCAATAGCTTTTTCCTTTTGAGTTTGCTTCCTCTTATTCTTGTTAGCTCATTCCAAATTACATTCACAGATGCGAGTAGTTCACCCACTCTCGACATTGGTTTTTTGAACCGGAGCAGCTTCCCTCCAGGTTTCATCTTTGGGGTTGGATCTTCTGCATACCAGTTCGAAGGTGCTGCAAGGGAAGGGGGTAGAGGACCAAGTATCTGGGATACCTTCACTCATGACCATCCAGAGAAGATAGAGGATGGGAGCAATGGAGATGTTGCGGTAGACCAATATCATCGTTACAAGGAAGATGTTGGGATCATGAAGGATTTGAATTTGGATTCATATAGATTCTCCATCTCATGGCCCAGAATACTGCCAAAAGGAACTCTAAGTGTCATAAATCGTGAAGGAATCGATTATTACCACAATCTCATTGATGAACTATTGGCTAAAGGTATTAAGCCATTGGTGACTCTTTTTCATTGGGATCTTCCCCAAGCATTGGAAGATGAGTACGGTGGTTTCTTGAGCTCTCGCATAGTAAAAGATTTTCAAGACTACGCAGATCTTTGCTTCAAAGAATATGGAAAAAAGGTTAAGTTGTGGACTACTTTGAATGAACCATATATATTTAGTACTAATGGCTATGCAACTGGGATGTTTGCACCTGGTCGATGTTCTGATTGGTTGAAGTTAAATTGCACTGGTGGTGATTCTGGCACAGAACCCTACATAGTTAGTCATAATCAACTTCTTGCCCATGCTGCTGCTGTAAACATTTACAGAACTAAGTATCAGGCAATTGATAAAGGTACGATAGGCATAACTTTAAATACAAACTGGTTCATACCGCTCTCAGAAATTAGCCCTCATGATATTAAGGCTGCTAGAAGAACACTTGACTTCCAATATGGATGGTACATGGAACCTCTAACAAAAGGAGAGTATCCAGAAAACATGCGAGCCTTGGTGGGAAATCGATTACCAAGTTTCACTTCAGAGCAAGCTAGGCTAGTGAATGGTTCATTTGACTTTATTGGTCTTAACTATTACTCCTCTGCTTATTCCTTTCCAGCACCACCAACCAATGGCGAACCCAGTTACCAAACAGATTTTTTGGCCAATTCTACTTTTGAGCGCAATGGAAGACCACTAGGTTTAAGGGCCGCTTCATTTTGGTTATATTTTTATCCAAAGGGACTTCGAGATCTTTTGATATACACCAAGAACAAATACAACAACCCATTGATTTACATCACCGAGAATGGTATGAGTGAGTTCAATGATCCAACATTATCCCTAGATGAAGCTCTTGTTGATACTTACAGAATTGATTATCATTATCGTCATCTCTTTTATCTTCGATATGTCATTGAGGAGCATGGGGTGAATGTAAAGGGATATTATCCATGGTCATTTTTGGATAATCTAGAATGGTCCTCAGGCTTTACAGTGAGGTTTGGATTGGTTTTTGTGGATTTCAAAAAAGGCTTGGAAAGGCACGCAAAGACTTCTGCATTGTGGTACAAGGACTTCCTCCAAAAATAG 1545 0.4019 MAFNSFFLLSLLPLILVSSFQITFTDASSSPTLDIGFLNRSSFPPGFIFGVGSSAYQFEGAAREGGRGPSIWDTFTHDHPEKIEDGSNGDVAVDQYHRYKEDVGIMKDLNLDSYRFSISWPRILPKGTLSVINREGIDYYHNLIDELLAKGIKPLVTLFHWDLPQALEDEYGGFLSSRIVKDFQDYADLCFKEYGKKVKLWTTLNEPYIFSTNGYATGMFAPGRCSDWLKLNCTGGDSGTEPYIVSHNQLLAHAAAVNIYRTKYQAIDKGTIGITLNTNWFIPLSEISPHDIKAARRTLDFQYGWYMEPLTKGEYPENMRALVGNRLPSFTSEQARLVNGSFDFIGLNYYSSAYSFPAPPTNGEPSYQTDFLANSTFERNGRPLGLRAASFWLYFYPKGLRDLLIYTKNKYNNPLIYITENGMSEFNDPTLSLDEALVDTYRIDYHYRHLFYLRYVIEEHGVNVKGYYPWSFLDNLEWSSGFTVRFGLVFVDFKKGLERHAKTSALWYKDFLQK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g1761 514 PRINTS Glycosyl hydrolase family 1 signature 341 355 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 PRINTS Glycosyl hydrolase family 1 signature 461 478 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 PRINTS Glycosyl hydrolase family 1 signature 485 497 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 SUPERFAMILY (Trans)glycosidases 33 513 IPR017853 -
Lan8g1761 514 Gene3D Glycosidases 31 514 - -
Lan8g1761 514 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 513 - -
Lan8g1761 514 Pfam Glycosyl hydrolase family 1 41 513 IPR001360 GO:0004553|GO:0005975
Lan8g1761 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Lan8g1761 514 ProSitePatterns Glycosyl hydrolases family 1 active site. 416 424 IPR018120 -
Lan8g1761 514 PANTHER GLYCOSYL HYDROLASE 3 513 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g1761 Lan-Chr8 24266572 24272701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g1761 9 508 Glycoside Hydrolase AT5G42260 53.082 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g1761 - K01188 gmx:778162 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0199 7 1215571 1219880 Lan8g1761 8 24266572 24272701 LSH
Lan6g2177 6 32164443 32172779 Lan8g1761 8 24266572 24272701 PCT
Lan10g0322 10 2138486 2145481 Lan8g1761 8 24266572 24272701 PCT