Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2177 ATGGCGTTTAAAGTGTTTTTATTTGTTGGCTTTTTTGCTCTTGTTACAACCACATCAGTTACTTTTGCAGAAGAAGTTGTTGCACCCATTCTTGACGTTGCATCACTGAATAGAACCACTTTTCCCAAAGGTTTTGTTTTTGGCACAGCATCTTCATCATACCAGTATGAAGGAGCAGCAAAAGAAGGTGGTAGAGGACCAAGTATATGGGATTTCTTCACTCATAAATATCCAGAAAAGATACAAGATAGAAGCAATGGAGATGTCGCAAATGATGAATATCACCACTATAAGGAAGATGTTGGGATCATGAAGCATATGAATTTGGATGCTTATAGATTCTCCATTTCTTGGTCTAGGATACTCCCAAATGGAAAACTAAGTGGAGGTATAAACAAAGAAGGGGTCAAATATTACAACAATCTCATTAACGAGCTACTAGCTAATGATATACAACCATTTGTGACCCTTTTTCATTGGGATCTTCCCCAAGCCTTGGAAAAGGAGTATGGTGGCTTCCGAAGCCCAAAGATTATAAAACATTTTAGAGATTATGCAGCTATTTGCTTCAAAGAATTTGGAGATAGGGTGAAGCAATGGATTACTTTGAATGAGCCATGGACTTATAGTCAAAATGGTTATGCATTAGGAAATATTGCACCAGGTAGATGTTCTAAATGGGTTAACCCAAACTGCACTGGTGGTGACTCAGGGACAGAACCCTATGTGGTTTCACATCATCAGCTTCTTGCTCATGCTGCAGCTGTTCAAGTATACAAGAAAAAGTATCAGATATCTCAAAAAGGTGTAATTGGCATAACCTTGGTGTCTCAATGGTTTTTGCCACATTCAAATAACAAATCAGATAAAAAAGCTGCCACAAGAGCAATTGACTTCATGTTTGGATGGTTTATGGGACCATTGACAACAGGAGATTATCCAAAAAGCATGCGTTCAATAGTGGGAAAACGATTGCCAAAGTTTAATAAATTACAAGCTAAACTAATCAATGGTTCATTTGATTTTCTTGGACTAAATTACTACACAACTAACTATGCTTCCAATGCACCTCACCTGAGCAATGGCATGCATAATTATGTTACAGATTCTCTCGCCAATCTTACAACTGAGCGCAATGGGATTCCCATAGGTCCAAGGGCTGCTTCACCATGGTTATATGTTTATCCTAAAGGAATTGAAGAACTATTACTCTACATTAAAAAGAAGTACAACAACCCTTTGATTTACATCACTGAAAATGGTGTAGATGAGTTTAATGATCCAACATTATCACTCAAGGAAGCTCTTATAGATACTTTCAGAATTGACTATTATTATCGTCATCTCTATTATCTTCAATCGGCAATTAAAAATGGTGTAAATGTAAAAGGATATTTTGCATGGTCATTGTTGGATAACTTTGAATGGGCTTCAGGTTACACAGTGCGATTTGGAATGAACTTTGTAGATTATAAAAATGGTAAACGATACCAAAAATTATCAGCTGAATGGTTCAAGAATTTCCTCAAAAGACATTAA 1539 0.3658 MAFKVFLFVGFFALVTTTSVTFAEEVVAPILDVASLNRTTFPKGFVFGTASSSYQYEGAAKEGGRGPSIWDFFTHKYPEKIQDRSNGDVANDEYHHYKEDVGIMKHMNLDAYRFSISWSRILPNGKLSGGINKEGVKYYNNLINELLANDIQPFVTLFHWDLPQALEKEYGGFRSPKIIKHFRDYAAICFKEFGDRVKQWITLNEPWTYSQNGYALGNIAPGRCSKWVNPNCTGGDSGTEPYVVSHHQLLAHAAAVQVYKKKYQISQKGVIGITLVSQWFLPHSNNKSDKKAATRAIDFMFGWFMGPLTTGDYPKSMRSIVGKRLPKFNKLQAKLINGSFDFLGLNYYTTNYASNAPHLSNGMHNYVTDSLANLTTERNGIPIGPRAASPWLYVYPKGIEELLLYIKKKYNNPLIYITENGVDEFNDPTLSLKEALIDTFRIDYYYRHLYYLQSAIKNGVNVKGYFAWSLLDNFEWASGYTVRFGMNFVDYKNGKRYQKLSAEWFKNFLKRH* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2177 512 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 45 59 IPR033132 -
Lan6g2177 512 PANTHER GLYCOSYL HYDROLASE 1 511 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 1 511 - -
Lan6g2177 512 Gene3D Glycosidases 21 511 - -
Lan6g2177 512 Pfam Glycosyl hydrolase family 1 38 511 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PRINTS Glycosyl hydrolase family 1 signature 339 353 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Lan6g2177 512 SUPERFAMILY (Trans)glycosidases 28 510 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2177 Lan-Chr6 32164443 32172779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2177 11 509 Glycoside Hydrolase AT5G44640 55.578 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2177 - K01188 gmx:100812431 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2177 6 32164443 32172779 Lan10g0322 10 2138486 2145481 LSH
Lan6g2177 6 32164443 32172779 Lan7g0199 7 1215571 1219880 PCT
Lan6g2177 6 32164443 32172779 Lan8g1761 8 24266572 24272701 PCT