Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0322 ATGGCTTTCACCACCTTTTTTCTTCTCAGCCTCTTTGCTTTTGCTACCACCATTCCATTGGTTACTTTTACAGAAGCTGTTTCATCCATTCTTGATGTTTCTTCATTGAATCGAACCAGTTTTCCACCAGGCTTCATCTTTGGTTCAGCAGCTTCAGCATACCAGTATGAAGGTGCAGCAAATGAAGATGGCAGAGGAGCATGTATATGGGACACCTTCGCCCATAAATATCCAGAGAAAATTATGGACGGAAGCAATGCAGATGTCCCCATTGACGAATATCACATGTACAAGGAAGATGTGGGGATCATGAAAAACATGAGTTTTGATGCTTACAGATTATCCATCTCTTGGTCTAGAATATTACCAAAAGGGAGATTAAGTGGAGGTATAAATCAAGAAGGAATCAAATATTATAATAACCTCATCAACGAGCTAGTGGCTAATGGTATACAACCATTCGTGACCCTTTTTCATTGGGATCTCCCTCAAGCCTTGGAAGATGAGTATGGAGGCTTCTTAAGCCCTCAAATAGTAAATGATTATAGAGATTATGCAGAAGTATGTTTCAAAGAATTTGGAGACAGAGTAAAACATTGGATTACTTTGAACGAGCCATCTACTTATAGCACAGGTGGTTATTCAATAGGAATGTTTCCACCAGGTCGATGTTCTGATTGGCAGAATCTAAATTGCACTGGTGGTGATTCAGCCACAGAACCCTATTTAGTTGCACATAACTTGCTCCTTGCTCATGCTGCAGCTGTTCAACTTTATAAAACTAAGTATCAGGTACCATTGTTACTGAAAAGGAGCAAAAACACATTTGAAGAGGGTAAAATAGGCATAACATTGATATCTCATTGGTTTGTGCCGGCTACAGATAGCAAATTGGACCAAAGAGCTACTCAACGAGCATTTGATTCCATGCTCGGATGGTTTATGGAACCATTGACAAAAGGTGAGTATCCAAAAAGCATGAGATCATTGGTTGGAAGTAGATTGCCCAAATTCTCAAAAGAGCAAGCCAGATTACTTACTGGTTCATTTGATTTTCTTGGACTAAACTACTACACCGCTATGTATGTTTCCAATGCACCAAACCAAACCAATGCCCAACCCACTTACCTCACAGATTCTCTTGCCAACATGACATATGTATGGAATGGGAAACCCATAGGCCCAAAGGCTGCTTCATTTTGGCTATATGTTTATCCAAGAGGATTCCAAAATTTGCTGCTCTACATCAAGGAAAAGTACAACAACCCTATCATTTATATTACTGAAAATGGTATAGATGAGCATAACGATCCAACAATTTCTTTGGATCAAGCTCTTGTGGATGTTGACAGAATAAAATATCATTATGAACATCTCTTTTATCTTCGAGAAGCAATTAGGAATGGTTCAAATGTGAAAGGATATTTTCTTTGGTCATTGTTGGATAACTTTGAATGGGAAGAAGGCTACACAGTGCGATTTGGATTATACTTTGTCGATTATAACAATAATTTTAGAAGGTATCAGAAGCTATCAGCACAATGGTTCCAAAGATTTCTGAAGAATTTGTAA 1572 0.3842 MAFTTFFLLSLFAFATTIPLVTFTEAVSSILDVSSLNRTSFPPGFIFGSAASAYQYEGAANEDGRGACIWDTFAHKYPEKIMDGSNADVPIDEYHMYKEDVGIMKNMSFDAYRLSISWSRILPKGRLSGGINQEGIKYYNNLINELVANGIQPFVTLFHWDLPQALEDEYGGFLSPQIVNDYRDYAEVCFKEFGDRVKHWITLNEPSTYSTGGYSIGMFPPGRCSDWQNLNCTGGDSATEPYLVAHNLLLAHAAAVQLYKTKYQVPLLLKRSKNTFEEGKIGITLISHWFVPATDSKLDQRATQRAFDSMLGWFMEPLTKGEYPKSMRSLVGSRLPKFSKEQARLLTGSFDFLGLNYYTAMYVSNAPNQTNAQPTYLTDSLANMTYVWNGKPIGPKAASFWLYVYPRGFQNLLLYIKEKYNNPIIYITENGIDEHNDPTISLDQALVDVDRIKYHYEHLFYLREAIRNGSNVKGYFLWSLLDNFEWEEGYTVRFGLYFVDYNNNFRRYQKLSAQWFQRFLKNL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0322 523 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 45 59 IPR033132 -
Lan10g0322 523 SUPERFAMILY (Trans)glycosidases 30 522 IPR017853 -
Lan10g0322 523 Gene3D Glycosidases 21 523 - -
Lan10g0322 523 PRINTS Glycosyl hydrolase family 1 signature 349 363 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PRINTS Glycosyl hydrolase family 1 signature 425 433 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PRINTS Glycosyl hydrolase family 1 signature 448 459 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PRINTS Glycosyl hydrolase family 1 signature 469 486 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PRINTS Glycosyl hydrolase family 1 signature 493 505 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 7 521 - -
Lan10g0322 523 Pfam Glycosyl hydrolase family 1 39 522 IPR001360 GO:0004553|GO:0005975
Lan10g0322 523 PANTHER GLYCOSYL HYDROLASE 7 521 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0322 Lan-Chr10 2138486 2145481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0322 36 520 Glycoside Hydrolase AT5G44640 53.909 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0322 - K01188 gmx:100812431 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2177 6 32164443 32172779 Lan10g0322 10 2138486 2145481 LSH
Lan10g0322 10 2138486 2145481 Lan7g0199 7 1215571 1219880 PCT
Lan10g0322 10 2138486 2145481 Lan8g1761 8 24266572 24272701 PCT