Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2140 ATGGCTTCAGTTTCTTCAGTCAAATTCTTTCTGTGCTTAGTTCTATGGCTCTTCAACTTTCTACCTCTTTCTCAAGGTAATGAATATCACTATCCATTTATAAAAAAAGCAAGCACATTCTCATCTTCACCACCATCAGCTTCAACAACCACCACAAATAATGTATATGACTACATAATAGTGGGAGGTGGCACATCAGGGTGTCCATTGGCTGCAACATTGTCTCAGAATTTCAGTGTTTTGTTGGTTGAAAGAGGAGGAATCCCTTTCACTAACCCCAATGTGTCATTTTTAGATAACTTTCACATTAACTTGGCAGACACTTCACCAACTTCAGCTTCTCAATACTTCATTTCAACAGATGGAGTCATGAATGCAAGGGGGAGGATTTTGGGTGGTGGCACTTCCATTAATGCTGGCTTCTACACTAGAGCTAGCACAAGATACATAGAAAAAGTAGGATGGGATGCAAAGCTAGTAAATGAGTCATATCCATGGGTTGAGAATCAGATTGTTTATCGTCCAAAGTTTTCAGCTTGGCAAAGAGCAGCAAGGGATAGTCTTCTAGATGCTGGTGTATCACCTTTTAATGGCTTCACCTATGATCATAAATATGGTACCAAAGTTGGTGGAACCATTTTTGATAGATTTGGTCACCGTCACACAGCTGCTGAACTTCTTGCACATGGAAACCCTCATAAACTTACTGTTTTGATCCATGCAACTGTCCAAAGGATTGTTTTTGATACAACTGGAAAGAGACCAAAAGCTATGGGAATTATTTTCAAGGATGAAAATGGGAAACAACATAAGGCGATTCTTGGAAGTGATAAAAAGAGTGAAGTGATTGTGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTATTGCTTAGTGGAATTGGCCCAAAATCAGAACTTGAGAAGTTGAACATTTCTGTGGTGCTTGACAACAAATTTGTTGGTAAGGGCATGGCTGATAACCCAATGAACACAATATTTGTTCCTTCTAAGAGACCAATTCAGCAGACACTCATAGAAACTGTTGGTATTACCAAAGTTGGTGTCTACATTGAGACTAGTTCTGGGTTTGGACAGTCCAATAACAGCATTCACTGCCACCATGGTCTCTTATCAGCTGAGATTGGGCAGCTATCAACAATTCCTCCCAAACAAAGATCACGAGAAGCTGTTGAAGCTTTCATCAAGAACAAGAAAGACATACCCATTGAAGCATTCAAAGGAGGATTCATCTTATCAAAAGTTGCAAATCCTTGGTCAACAGGTGAACTCAAATTGATGAACACCAACGTTGATGACAACCCTAATGTTACCTTCAACTACTTCAACCATCCAAATGATCTTCAACGATGTGTTGAAGGGATTCGTTTAGCTACTAAGGTTGTTCAGTCACAACACTTCACAAACTACACTATGTTTAATAGACAAACTACACAGGAACTGTTTAACCTAACTGTGAAGGCTAATGTGAACTTTATACCTAAGAATCTCAATGACACAAAATCGTTGGAGCAGTTTTGTAGAGACACTGTGATCACTATTTGGCACTATCATGGTGGTTGTCATGTTGGGAAGGTAATCAACTCTGAGTATAAGGTTATTGGTGTTGATAGACTCAGTGTGGTGGATGGTTCAACATTTACTGAGTCACCAGGAACTAATCCTCAAGCTACTGTGATGATGCTGGGCAGGTACATGGGACTGAAGATATTAAGAGATAGGTTGGGGAAATTGGCTGGTGTATAA 1764 0.3985 MASVSSVKFFLCLVLWLFNFLPLSQGNEYHYPFIKKASTFSSSPPSASTTTTNNVYDYIIVGGGTSGCPLAATLSQNFSVLLVERGGIPFTNPNVSFLDNFHINLADTSPTSASQYFISTDGVMNARGRILGGGTSINAGFYTRASTRYIEKVGWDAKLVNESYPWVENQIVYRPKFSAWQRAARDSLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGHRHTAAELLAHGNPHKLTVLIHATVQRIVFDTTGKRPKAMGIIFKDENGKQHKAILGSDKKSEVIVSSGAIGTPQLLLLSGIGPKSELEKLNISVVLDNKFVGKGMADNPMNTIFVPSKRPIQQTLIETVGITKVGVYIETSSGFGQSNNSIHCHHGLLSAEIGQLSTIPPKQRSREAVEAFIKNKKDIPIEAFKGGFILSKVANPWSTGELKLMNTNVDDNPNVTFNYFNHPNDLQRCVEGIRLATKVVQSQHFTNYTMFNRQTTQELFNLTVKANVNFIPKNLNDTKSLEQFCRDTVITIWHYHGGCHVGKVINSEYKVIGVDRLSVVDGSTFTESPGTNPQATVMMLGRYMGLKILRDRLGKLAGV* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2140 587 SUPERFAMILY FAD/NAD(P)-binding domain 49 579 IPR036188 -
Lan6g2140 587 Pfam GMC oxidoreductase 56 328 IPR000172 GO:0016614|GO:0050660
Lan6g2140 587 Gene3D - 56 569 IPR036188 -
Lan6g2140 587 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 587 - -
Lan6g2140 587 Gene3D - 173 519 - -
Lan6g2140 587 SUPERFAMILY FAD-linked reductases, C-terminal domain 324 526 - -
Lan6g2140 587 PIRSF Alcohol_oxidase 32 586 IPR012132 GO:0050660
Lan6g2140 587 ProSitePatterns GMC oxidoreductases signature 2. 287 301 IPR000172 GO:0016614|GO:0050660
Lan6g2140 587 Pfam GMC oxidoreductase 424 570 IPR007867 GO:0016614
Lan6g2140 587 PANTHER OSJNBA0019K04.7 PROTEIN 2 587 - -
Lan6g2140 587 ProSitePatterns GMC oxidoreductases signature 1. 128 151 IPR000172 GO:0016614|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2140 Lan-Chr6 31865228 31878505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2140 14 580 Miscellaneous Gene Families AT5G51950 48.709 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2140 K15403 - gmx:100779461 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2140 6 31865228 31878505 Lan3g0227 3 1479641 1486226 LSH
Lan6g2140 6 31865228 31878505 Lan5g0623 5 12776119 12784046 PCT
Lan6g2140 6 31865228 31878505 Lan2g0402 2 4067400 4074831 PCT
Lan5g0623 5 12776119 12784046 Lan6g2140 6 31865228 31878505 PCT
Lan2g0402 2 4067400 4074831 Lan6g2140 6 31865228 31878505 PCT