Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1970 ATGGCAACAAATTCTTCTAATGGAAATCACCAAACAACAACAAAGCAACCTCCAATGCCATCTCCTTTGCGTTTTTCCAAATTCTTTCAGCCCAACATGAGAATTTTGGTTACTGGAGGAGCTGGATTCATTGGGTCTCACCTAGTTGATAGATTGATGGAAAATGAAAAAAATGAGGTTATTGTTGCTGATAACTACTTTACTGGATCCAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAACCTTTGTTCGTTGAAGTTGATCAAATCTACCATCTTGCATGCCCTGCATCTCCTATTTTCTACAAATACAATCCAGTAAAGACAATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGCCTTGCAAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTGTATGGAGATCCTCTTGTGCATCCTCAACCTGAAAGCTATTGGGGAAATGTTAACCCTATTGGAGTTCGTAGTTGCTACGATGAGGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGACAACATGGACTAGAAATACGAATTGCTAGAATCTTTAACACATATGGGCCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGTGACGAACCCTTGACGGTCCAATCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGACCTGGTCGATGGCCTTATCCGTCTCATGGGAGGATCAAACACGGGGCCAATCAACCTTGGAAACCCAGGTGAATTTACAATGACTGAACTTGCAGAGACAGTGAAAGAGCTTATTAATCCAAATCTGCATATCAAGACAGTGGAAAACACACCTGATGATCCTCAACAGAGAAAACCAGACATAACAAAAGCGAAGGAACTGTTAGGCTGGGAACCGAAGGTTAAGTTGCGCAACGGTCTTCCTCTTATGGAAGAGGATTTCCGTCTAAGGCTCGGAGTTGAGAAAATCAAAAGCAGTTAA 1047 0.4222 MATNSSNGNHQTTTKQPPMPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRDEPLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSNTGPINLGNPGEFTMTELAETVKELINPNLHIKTVENTPDDPQQRKPDITKAKELLGWEPKVKLRNGLPLMEEDFRLRLGVEKIKSS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1970 348 Pfam GDP-mannose 4,6 dehydratase 36 330 IPR016040 -
Lan6g1970 348 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 344 - -
Lan6g1970 348 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g1970 348 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 344 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lan6g1970 348 CDD UGD_SDR_e 33 337 - -
Lan6g1970 348 Gene3D - 32 339 - -
Lan6g1970 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 337 IPR036291 -
Lan6g1970 348 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1970 Lan-Chr6 30622183 30626856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1970 35 329 Miscellaneous Gene Families AT1G02000 25.455 1.25e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1970 K08678 - gmx:100790835 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1970 6 30622183 30626856 Lan7g0250 7 1581706 1586374 PCT
Lan6g1970 6 30622183 30626856 Lan8g1711 8 23944126 23948446 PCT
Lan13g0337 13 2218637 2222766 Lan6g1970 6 30622183 30626856 PCT