Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1299 ATGTCTTCTTTGAGCAGAGAGTTGGTGTTTCTCATTCTTCAGTTTCTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCATAAGCTTGAGAAAGAGTCGGGGTTTTACTTCAATGTGAAGTACTTTGAGGAGAAAGTGCAGGCTGGTGAATGGGATGAAGTTGAGAAGTATTTATCAGGATTTACCAAAGTTGATGATAATAGATACTCTATGAAAATATTCTTTGAAATAAGGAAGCAGAAATATCTGGAAGCACTTGATCGACAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGCGATTTAAAAGTATTTTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCAAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTGTTCCGTGATAAGCTTATCTTCCCGACTCTTAAGTCATCAAGATTACGCACTTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAATCCAAGGCCAAACCCAGATATAAAAACTTTATTCACAGATCATTCATGTACACCTCCTAATGGTCCACCTTTGGCACCTGCACCTGTCAATCTTCCGATTTCTGCAGTTGCAAAGCCCACTGCTTATACTTCACTTGGAGTTGGATCTCATGGCCCCTTTCCACCTGCTGTTGCACCGGCTAATGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGTCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCTCAGCCTCTACCATACCAGCCCCACAAAATCAAGTGTCTATCTTGAAACGTCCTAGAACTCCTCCAACAACTCCTGGGATGGTTGATTATCAAAATGCTGATCATGAACAGCTAATGAAAAGATTTCGGCCTGGTCATTCTGTTGAGGAGGTTTCCTATCCTTCAGCTCGACAAGCTTCTTGGTCGCTAGATGATCTCCCAAGAACAGTGGCAATGACTTTGCATCAAGGATCCTCTGTAACGAGCATGGATTTTCATCCTTCTCACCACACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATCACCCTCTGGGATCTCAGTTTGCGAGAAAAGTTGGTTTCAAAGCCATTCAAGATATGGGATATGCAGTCATGCTCATTGCCATTTCAGGCAGTTGTGGTTAAAGATGCACCTATTTCTGTCAGCCGTGTCACTTGGAGCCCTGATGGGAATTTTGTGGGTGTTGCTTTTACTAAACATTTGATTCACTTATATGCCTATACTGGATCAAATGATCTAGCCCAGCGTATAGAGGTTGATGCCCATATTGGTGGTGTGAATGATTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGGGATGATAAGTGGATAAAGGTGTGGGATTTAAATGGACGAAGGCTATTTCACTTCGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACCGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAGCATGGGTTCTAGGGTTGACTATGATGCTCCAGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACGAGTAAGGATGGAGAGTCTTTCCTTGTTGAATGGAATGAGAGTGAAGGAGCCATTAGGAGAACGTACAATGGATTCAGAAAGAAATCTACAGGTGTTGTGCAGTTTGACACAACTCAAAATCGCTTTTTGGCTGCAGGGGAAGATGGTCAAATAAAGTTTTGGGACATGGACAATATTAATCTTCTAACAAGTACTGATGCGGATGGTGGATTACAGGGCCTTCCACGCTTGAGATTCAATAAGGAAGGAAATATTCTTGCTGTTACTACTGTGGATAACGGATTCAAGATACTTGCCAATGCTACTGGTCTTAGATCCTTAAGAACAGTTGAAACTCATACATTTGAAGCATTGAGGCCACCCATTGAATCCCCTGCAATCAAGGTATCTGGCTCTTCTACAGTTAGCCCTATCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGGGTTGATCCCTCGAGTCGAAGTGTAGAGAAACCAAGAACCGTGGAAGATGCAATAGATAGAACTAAACCATGGCAGCTGTCTGAAATTCTGGATCCTGTCCAATGTCGATTAGTTACCATGCCTGACAGCACAGATTCTTCCATCAAGGTTGTTCGACTTTTGTATACGAATTCTGGTGTTGGTATTTTGGCACTTGGTTCAAATGGTATTCAGAAATTGTGGAAGTGGGCTCGCAGTGAGCAGAATCCCACTGGGAAGGCCACGGCCAGTGTTGTTCCACAACATTGGCAACCCAACAATGGTCTTCTTATGACAAATGATATCTCAGGTGTGAACCTTGAAGAAGCAGTTCCTTGTATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCATCTACCTTCCTAGCCTTCCACCCCAAGGATAACAACATTATAGCCATCGGGATGGAAGATTCGACCATTCACATTTACAATGTCAGAGTGGATGAGGTAAAATCAAAATTGAAGGGCCATCAGAAGCGTATTACTGGTTTAGCCTTTTCAACACATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTCTGGAGCATTGATACATGGGAGAAAAGAAAAGCAATTCCTATACAACTCCCTGCAGGAAAACCACCTGTTGGTGATACACGAGTACAGTTCCATTCAGACCAACTTCGCTTATTGGTAGTCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGATCGCATCCGGCAGTGGGTTCCACAAGATTCTCTGTCTGCCCCCATATCACATGCGACATATTCCTGCAACAGCCAGTTAGTTTATGCTACATTTTGTGATGCCAATGTTGGGGTTTTTGATGCCGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTTGCCACCGGCAGCTTCAAGTGGAAGCCAAGCTGTTTATCCTCTTGTGGTTGCAGCTCATCCACTAGAGCCAAACCAATTTGCTGTTGGGTTAACAGATGGGTCTGTCAGAGTGATAGAACCCACTGAATCAGAAGGTAAGTGGGGATATTCTCCACCTATCGACAACGGAATATTGAACAGGACGACATCGTCATCTACAACAAGCAACCACACGGCCGATCAGTCCCAAAGATAA 3396 0.4308 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNVKYFEEKVQAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCTPPNGPPLAPAPVNLPISAVAKPTAYTSLGVGSHGPFPPAVAPANANANALAGWMANVSASSSVQAAVVSASTIPAPQNQVSILKRPRTPPTTPGMVDYQNADHEQLMKRFRPGHSVEEVSYPSARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWDLSLREKLVSKPFKIWDMQSCSLPFQAVVVKDAPISVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNDLAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKWIKVWDLNGRRLFHFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDSMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIRRTYNGFRKKSTGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTSTDADGGLQGLPRLRFNKEGNILAVTTVDNGFKILANATGLRSLRTVETHTFEALRPPIESPAIKVSGSSTVSPINCKVERSSPVRPSPILNGVDPSSRSVEKPRTVEDAIDRTKPWQLSEILDPVQCRLVTMPDSTDSSIKVVRLLYTNSGVGILALGSNGIQKLWKWARSEQNPTGKATASVVPQHWQPNNGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPKDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTHLNILVSSGADAQLCVWSIDTWEKRKAIPIQLPAGKPPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWVPQDSLSAPISHATYSCNSQLVYATFCDANVGVFDADSLRLRCRIAPSICLPPAASSGSQAVYPLVVAAHPLEPNQFAVGLTDGSVRVIEPTESEGKWGYSPPIDNGILNRTTSSSTTSNHTADQSQR* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1299 1131 Pfam WD domain, G-beta repeat 348 379 IPR001680 GO:0005515
Lan4g1299 1131 Pfam WD domain, G-beta repeat 453 487 IPR001680 GO:0005515
Lan4g1299 1131 Pfam WD domain, G-beta repeat 913 946 IPR001680 GO:0005515
Lan4g1299 1131 MobiDBLite consensus disorder prediction 1096 1131 - -
Lan4g1299 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 474 488 IPR019775 -
Lan4g1299 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lan4g1299 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1131 IPR027728 GO:0006355
Lan4g1299 1131 Gene3D - 322 567 IPR015943 GO:0005515
Lan4g1299 1131 SMART Lish 4 36 IPR006594 GO:0005515
Lan4g1299 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 496 IPR001680 GO:0005515
Lan4g1299 1131 Gene3D - 568 682 IPR015943 GO:0005515
Lan4g1299 1131 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 932 1104 - -
Lan4g1299 1131 SMART WD40_4 1002 1038 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 533 576 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 1059 1093 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 907 946 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 825 861 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 444 487 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 489 530 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 579 619 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 402 440 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 864 904 IPR001680 GO:0005515
Lan4g1299 1131 SMART WD40_4 340 379 IPR001680 GO:0005515
Lan4g1299 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 949 - -
Lan4g1299 1131 PANTHER PROTEIN, PUTATIVE-RELATED 1 1131 - -
Lan4g1299 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 366 951 IPR011047 -
Lan4g1299 1131 SMART ctlh 34 92 IPR006595 -
Lan4g1299 1131 MobiDBLite consensus disorder prediction 706 735 - -
Lan4g1299 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 388 IPR001680 GO:0005515
Lan4g1299 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 597 628 IPR001680 GO:0005515
Lan4g1299 1131 MobiDBLite consensus disorder prediction 1109 1131 - -
Lan4g1299 1131 Gene3D - 831 1104 IPR015943 GO:0005515
Lan4g1299 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lan4g1299 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 955 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1299 Lan-Chr4 21789957 21798991 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1299 - - gmx:100793575 2060.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1299 4 21789957 21798991 Lan4g1299 4 21789957 21798991 ECH
Lan8g0338 8 5408442 5414133 Lan4g1299 4 21789957 21798991 LSH
Lan4g0899 4 10926800 10938923 Lan4g1299 4 21789957 21798991 PCT
Lan2g0274 2 2322757 2332430 Lan4g1299 4 21789957 21798991 PCT
Lan4g1299 4 21789957 21798991 Lan4g0899 4 10926800 10938923 PCT
Lan4g1299 4 21789957 21798991 Lan2g0274 2 2322757 2332430 PCT