Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0274 ATGACTTCTCTGAGTAGAGAATTGGTGTTTCTGATACTCCAATTTCTGGAGGAAGAGAAGTTCAAAGAGTCTGTGCACAAGCTTGAGAAGGAATCTGGGTTTTTCTTCAACTTGAAATACTTTGAAGAAAAAGTACATGCTGGTGAATGGGATGAAATTGAGAAGTACTTGTCAGGGTTTACAAAAGTTGATGATAATCGATACTCAATGAAAATATTCTTTGAGATCAGGAAGCAAAAATATCTTGAAGCACTTGATAGGAATGACAAGGCATCAGCTGTGGAGATATTAGTCGGTGACTTGAAGGTTTTTTCCACCTTCAATGAGGAACTATATAAAGAAATCACACAGCTGTTAACTCTAAATAATTTTAGAGAGAATGAGCAGCTATCCAAGTATGGTGACACCAAAACTGCAAGAGGGATTATGTTGATAGAGCTAAAGAAGCTCATAGAGGCAAATCCTCTCTTCCGTGATAAGCTTGTGTTTCCCAATCTCAAGTCCTCAAGATTAAGGACTTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCAAGGCCAAATCCAGATATAAAGACTTTGTTCACAGATCACTCATGTGCACCTCCTAATGGTCCTCTAGCACCTACGCAAGTGAATCTTCCCGGTGCTGCTGTTGCAAAGCCTGCTACTTATACTTCACTCGGAGCTCTTGGTGCCTTTCCACCTGCTGCAGCAAATGCTAATGTGAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCTTCTGTCCAAGCGGCCGTCGCCACAGCATTAACCATACCAGTCCCACAGAATCAAGTGTCTATCTTGAAGCATTCAAGAACACCTCCATCAGGTCCCGGTATGGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGGCCTGCTCCTTCTCTAGAGGAGGTTACGTATCCTACAGCTCGACAAGCCCCTTGGTCACTGGATGATCTACCAAGAACTGTGGCTATGACTTTGCATGAAGGGTCCTCTGTGACAAGCATGGATTTTCATCCTTTTCAGCACACCTTACTACTTGTTGGTTGTAGTAATGGAGAAATTGCCCTTTGGGAAGTTGGGTTGCGAGACAGGTTGGACTCAAAGCCATTCAAGATATGGGACAAGACAAAGTGCTCATTGCCATTTCAGGCATCTGTGCTCAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCCTGAGGGAGATTTTGTGGGTGTTGCATTTACCAAAAATCTGATTCACTTATATGCCTTCATTGGACCAAGTGAGCTATCTCAGCGAATAGAGATTGATGCCCATATTGGTGGCGTGAATGACTTGGCATTTGCGCATCCAAATAAGCAACTCTGTATGGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGAAGGCTATTTGAATTTGAGGGGCATGAAGCACCTGTATACTCTGTCTGTCCTCACTACAAGGAGACTATTCAGTTCACATTTTCAACCGCAATAGATGGCAAAATAAAAGCCTGGTTATATGATAACATCGGTTCTAGGGTTGACTATGATGCTCCTGGTCACGGCTGTACTACAATGCTTTATAGTTCTGAAGGAAGCAGATTATTTTCTTGTGGGACGAGTAAAGATGGAGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCAATTAAGAGAACGTACAACGGGTTCAGAAAGAAATCTACTGGTGTTGTTCAGTTTGATACAGCCCAAAATCGCTTTTTGGCTGCTGGCGAAGACGGCCAAATCAAGTTTTGGGACATGGACAATATTAATCTTCTAGCAAGCACTGATGCAGATGGTGGACTACAGGTCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATCTTCTTGCCGTTACTACTTTGGACAATGGATTCAAAATTCTTGCTAATGCTAGTGGTCTTAGATCCATAAGAGCAGTTGAAACTATGGCATTTGAAGCGTTGAGGTTGCCAATTGAATTTGGTGCAGTGAAGGCATCTGGCTCTTCTGCTGTTAATATTAATCCTGTCCACTGTAAAGTGGAAAGCAGCTCCCCTGTCAGGCCTTCTCCAATTCTCAATGGAGTTGATCCCATGGGTCGAAATGTGGAGAAACCAAGAATCGTGGAAGATGTAATAGATAGACCTAAATCATGGCAGCTGTCTGAAATTGTGGATTCGGTACAATGCCGATTAGCTGCCATGCCTGACATCATAGATTCTTCCAGCAAGGTGGTCCGACTTATATATACGAATTCTGGTGCTGGTCTTTTGGCACTTGGCTCAAACGGTGTTCAGAAGCTATGGAAGTGGTCTCGCAATGAACAGAATCCCACCGGAAAGGCCACTGCTCATGTTGCTCCACAACATTGGCAACCCAACAATGGTCTTCTTATGAAAAATGATATCTCGGGAGTTAACCTTGATGAAGCGGTTCCTTGCATTGCACTCTCAAAGAACGATTCATATGTTATGTCTGCCTGTGGCGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTGATGACAACATTCATGCCGCCGCCTCCTGCCTCTACCTATCTAGCTTTTCACCCTCTGGATAACAACATCATAGCCATTGGAATGGAGGACTCGACCATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAGGGGCCACCAGAAGCGTATTAGCGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCCTCTGGTGCTGATGCTCAACTCTGTGTGTGGAGCATTGATACATGGGAGAAAAGGAAAACAGTTCCATTACAACTACCGGCTGGAAAGGCACCTGTTGGTGACACTCGAGTGCAGTTCAACACCGACCAAATCCGCTTGTTGGTAGCCCACGAGACTCAGTTGGCAATATACGATGCCTCGAAGATGGAACGCATTCAGCAGTGGGTTCCACAAGATGTTCTGCCTGCTCCAATATCAAATGCATGTTATTCTTGCAACAGTCGATTAATATACGCTACATTTTGTGATGGAAACACTGGGGTTTTCGATGCTGATAGCTTGCGACTAAGATGTCGTATTGCGTTGTCAACCTACTTGTCAGCAGCTGCTTTAAATGGAAACCAAGGTGTATATCCTGTTGTTGCTGCATGTCATCCACTAGATCCTCACCAATTTGCTATTGGTTTGACTGATGGGTCAGTAAAAGTGATGGAGCCAATTGAAACAGAGGGTAAGTGGGGAACTAATCCACCTTTGGATAATGGAATAGGTAGAACTGCATCATCATCTACAACAAGCAACCATACACCAGATCAGGCTCAAAGATAA 3384 0.4338 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNLKYFEEKVHAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDKASAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLVFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAPPNGPLAPTQVNLPGAAVAKPATYTSLGALGAFPPAAANANVNALAGWMANASASSSVQAAVATALTIPVPQNQVSILKHSRTPPSGPGMVDYQNADHEQLMKRLRPAPSLEEVTYPTARQAPWSLDDLPRTVAMTLHEGSSVTSMDFHPFQHTLLLVGCSNGEIALWEVGLRDRLDSKPFKIWDKTKCSLPFQASVLKDAPISVSRVTWSPEGDFVGVAFTKNLIHLYAFIGPSELSQRIEIDAHIGGVNDLAFAHPNKQLCMVTCGDDKLIKVWDLTGRRLFEFEGHEAPVYSVCPHYKETIQFTFSTAIDGKIKAWLYDNIGSRVDYDAPGHGCTTMLYSSEGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTAQNRFLAAGEDGQIKFWDMDNINLLASTDADGGLQVLPRLRFNKEGNLLAVTTLDNGFKILANASGLRSIRAVETMAFEALRLPIEFGAVKASGSSAVNINPVHCKVESSSPVRPSPILNGVDPMGRNVEKPRIVEDVIDRPKSWQLSEIVDSVQCRLAAMPDIIDSSSKVVRLIYTNSGAGLLALGSNGVQKLWKWSRNEQNPTGKATAHVAPQHWQPNNGLLMKNDISGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTYLAFHPLDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRISGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKTVPLQLPAGKAPVGDTRVQFNTDQIRLLVAHETQLAIYDASKMERIQQWVPQDVLPAPISNACYSCNSRLIYATFCDGNTGVFDADSLRLRCRIALSTYLSAAALNGNQGVYPVVAACHPLDPHQFAIGLTDGSVKVMEPIETEGKWGTNPPLDNGIGRTASSSTTSNHTPDQAQR* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0274 1127 MobiDBLite consensus disorder prediction 1106 1127 - -
Lan2g0274 1127 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lan2g0274 1127 SMART WD40_4 999 1035 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 391 435 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 528 571 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 861 901 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 484 525 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 335 374 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 574 614 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 441 482 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 904 943 IPR001680 GO:0005515
Lan2g0274 1127 SMART WD40_4 822 858 IPR001680 GO:0005515
Lan2g0274 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Lan2g0274 1127 Gene3D - 284 536 IPR015943 GO:0005515
Lan2g0274 1127 MobiDBLite consensus disorder prediction 1094 1127 - -
Lan2g0274 1127 SUPERFAMILY WD40 repeat-like 829 1090 IPR036322 GO:0005515
Lan2g0274 1127 Gene3D - 828 1098 IPR015943 GO:0005515
Lan2g0274 1127 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Lan2g0274 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Lan2g0274 1127 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lan2g0274 1127 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1127 IPR027728 GO:0006355
Lan2g0274 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Lan2g0274 1127 SMART ctlh 34 92 IPR006595 -
Lan2g0274 1127 Gene3D - 560 671 IPR015943 GO:0005515
Lan2g0274 1127 PANTHER PROTEIN, PUTATIVE-RELATED 1 1127 - -
Lan2g0274 1127 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Lan2g0274 1127 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Lan2g0274 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Lan2g0274 1127 SMART Lish 4 36 IPR006594 GO:0005515
Lan2g0274 1127 SUPERFAMILY WD40 repeat-like 317 655 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0274 Lan-Chr2 2322757 2332430 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0274 - - gmx:100793575 1936.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0899 4 10926800 10938923 Lan2g0274 2 2322757 2332430 LSH
Lan2g0274 2 2322757 2332430 Lan8g0338 8 5408442 5414133 PCT
Lan2g0274 2 2322757 2332430 Lan4g1299 4 21789957 21798991 PCT
Lan8g0338 8 5408442 5414133 Lan2g0274 2 2322757 2332430 PCT
Lan4g1299 4 21789957 21798991 Lan2g0274 2 2322757 2332430 PCT