Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0899 ATGAGTTCTCTGAGTAGAGAATTGGTTTTTCTGATTCTCCAATTTCTGGAGGAAGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCCGGGTTTTTCTTCAACATGAAATACTTTGAGGAAAAAGTTCAGGCTGGTGAGTGGGATGAAGTTGAGAAGTACTTGACGGGGTTTACGAAAGTTGACGACAATAGATACTCAATGAAGATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCACTTGATAGGCAAGACAGGGCATCGGCTGTGGAGATATTAGTGGGTGATCTGAAAGTTTTTTCCACATTCAATGAGGAACTATATAAAGAAATCACACAGCTGTTAACTCTGAATAATTTCAGAGAGAACGAGCAGCTATCCAAGTATGGTGACACCAAAACTGCACGAGGTATTATGTTGATAGAGCTAAAAAAGCTCATAGATGCAAATCCTCTCTTCCGTGATAAGCTTGTCTTCCCCACTCTCAAGTCCTCAAGATTAAGGACTTTAATCAATCAAAGTTTGAACTGGCAGCACCAGCTTTGCAAAAACCCGAGGCCAAACCCAGATATAAAGACTTTATTCACAGATCACTCGTGTGCACCTCCTAATGGTCCTCTAGCACCTACACCAGTGAATCTTCCTGTTGCCGCTGTTGCAAAGCCTGCTACGTATACTTCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCAGCAACTGCTAATGCCAATGCTTTGGCTGGTTGGATGGCCAATGCTTCAGCTTCATCATCTGTGCAAGCGGCTGTTGTCACAGCATCAACCATACCAGTCCCACAGAATCAAGTGTCTATGTTGAAGCGTCCAAGAACTCCTCCACCAGCTCCCAGTATGATTGATTACCAGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGGCCTACTCCTTCCGTAGAGGAGGTTTCATATCCTACAGCTCGGCAAGTTCCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCTATGACTTTGCATCAAGGGTCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTTCTTGTGGGTTCTAATAATGGTGAAATTGCCCTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCTCCAAGCCATTCAAGATATGGGACAAGACAAACTGCTTGCCATTTCAGGCTGCTGCGGCCAAAGATGCACCTATTTCTGTCAGCCGTGTCTCATGGAGCCCTGATGGAAACTTTGTGGGTGTTGCGTTTACCAAACATTTGATTCACTTATATGCCTACACCGCACCAAATGAGCTAGCCCAACGCATAGAGGTTGATGCCCATATTGGTGGCGTGAATGACTTGGCATTTGCTCATCCAAATAAGCAACTCTGTATCGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGAAGGCTATTTAACTTTGAGGGGCATGACACACCTGTATATTCTATTTGTCCTCACCACAAGGAGAGCATTCAGTTCATATTTTCAACTGCCATAGATGGCAAAATAAAAGCCTGGTTATATGATAACATTGGTTCTAGGGTTGACTATGATGCTCCTGGTCACTGGTGTACTACAATGCTTTATAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAATCATTTCTAGTTGAATGGAATGAAAGTGAAGGAGCGATTAAGAGAACATACAACGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTCGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGACGGCCAAATCAAGTTTTGGGACATGGACAATATTAATATTCTAACAAGCACTGATGCAGATGGTGGACTACAGGGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAACCTTCTTGCTGTTACTACTTTGGACAATGGATTCAAAATTCTTGCTAATGCTGTTGGTCTTAGATCCTTAAGAACAGTTGAAACTCCTGCATTTGAAGCATTGAGGTCGCCAATTGAATCTGCTGCAGTGAAGGTATCTGGTTCTTCTGTTAATATTAGTCCTGTCAATTGTAAAGTGGAAAGGAGCTCCCCTGCTAGGCCTTCTCCAATTCTTAATGGGGTTGAACCCATGGGTCGAAATGTGGAGAAACCAAGAAATGCGGAAGATGTAATAGAAAGACCTAAACCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCAATGTCGGTTAGCTACCATGCCTGACAACACAGATTCTTCCAGCAAGGTCGTTCGACTTCTATATACAAATTCTGGTGCTGGTCTTTTGGCGCTCGGCTCAAATGGTGTTCAGAAGCTATGGAAGTGGTCTCGCAATGAACAGAATCCCACTGGAAAAGCCACCGCCAGTGTTGTTCCACAACATTGGCAACCCAACAATGGTCTTCTTATGACAAATGATATCACGGGAGTTAACCTTGATGATGCAGTTCCTTGCATTGCACTATCGAAGAACGATTCATATGTTATGTCTGCATGTGGCGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACTACATTCATGCCACCGCCTCCTGCCTCTACCTATCTAGCTTTTCACCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACCATTCACATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAGAGGCCACCAAAAGCGAATTAGTGGCTTAGCCTTTTCAACTAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTATGTGTGTGGAGCATTGATACATGGGAAAAAAGGAAATCAGTTCCATTACAACTACCAGCTGGAAAAACGCCTGTTGGTGACACTCGAGTGCAGTTCAATTCCGACCAAATCCGCTTGTTGGTAGCCCATGAGACTCAGTTGGCAATATACGATGCCTCGAAGATGGATCGCATTCAGCAGTGGGTTCCACAAGACGTTCTTCCTGCTCCAATATCGAATGCATGTTATTCTTGCAACAGTCGATTAATATATGCTACATTTTGTGATGGCAACACTGGGGTTTTTGATGCCGATAGCTTGAGACTAAAATGTCGAATTGCATTGTCAACATACTTGTCGCCAACTGCTTTAAATGGAAGCCAAGGTGTATATCCTGTTGTTGCTGCAGCTCATCCACTAGATCCTAATCAATTTGGTGTTGGATTGAGTGATGGGTCAGTGAAAGTGATAGAACCCAATGAATCAGAGGGTAAATGGGGAACTAATCCACCTTTGGATAATGGAATTGGTAGAACAGCATCATCATCTACAACAAGTAACCATACACCAGATCAAGCTCAAAGATAA 3378 0.4328 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWDEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDRASAVEILVGDLKVFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIDANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAPPNGPLAPTPVNLPVAAVAKPATYTSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSMLKRPRTPPPAPSMIDYQNADHEQLMKRLRPTPSVEEVSYPTARQVPWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEIALWELGLRDRLVSKPFKIWDKTNCLPFQAAAAKDAPISVSRVSWSPDGNFVGVAFTKHLIHLYAYTAPNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHDTPVYSICPHHKESIQFIFSTAIDGKIKAWLYDNIGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINILTSTDADGGLQGLPRLRFNKEGNLLAVTTLDNGFKILANAVGLRSLRTVETPAFEALRSPIESAAVKVSGSSVNISPVNCKVERSSPARPSPILNGVEPMGRNVEKPRNAEDVIERPKPWQLSEIVDPVQCRLATMPDNTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNEQNPTGKATASVVPQHWQPNNGLLMTNDITGVNLDDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLRGHQKRISGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSVPLQLPAGKTPVGDTRVQFNSDQIRLLVAHETQLAIYDASKMDRIQQWVPQDVLPAPISNACYSCNSRLIYATFCDGNTGVFDADSLRLKCRIALSTYLSPTALNGSQGVYPVVAAAHPLDPNQFGVGLSDGSVKVIEPNESEGKWGTNPPLDNGIGRTASSSTTSNHTPDQAQR* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0899 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 622 IPR001680 GO:0005515
Lan4g0899 1125 SUPERFAMILY WD40 repeat-like 823 1090 IPR036322 GO:0005515
Lan4g0899 1125 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lan4g0899 1125 Gene3D - 826 1098 IPR015943 GO:0005515
Lan4g0899 1125 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lan4g0899 1125 Gene3D - 298 535 IPR015943 GO:0005515
Lan4g0899 1125 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1125 IPR027728 GO:0006355
Lan4g0899 1125 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Lan4g0899 1125 Pfam WD domain, G-beta repeat 447 481 IPR001680 GO:0005515
Lan4g0899 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 482 IPR001680 GO:0005515
Lan4g0899 1125 MobiDBLite consensus disorder prediction 1104 1125 - -
Lan4g0899 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Lan4g0899 1125 MobiDBLite consensus disorder prediction 701 722 - -
Lan4g0899 1125 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Lan4g0899 1125 SUPERFAMILY WD40 repeat-like 317 654 IPR036322 GO:0005515
Lan4g0899 1125 SMART ctlh 34 92 IPR006595 -
Lan4g0899 1125 MobiDBLite consensus disorder prediction 1089 1125 - -
Lan4g0899 1125 Gene3D - 539 685 IPR015943 GO:0005515
Lan4g0899 1125 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 438 481 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 997 1033 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 859 899 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 573 613 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 335 374 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 483 524 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 527 570 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 902 941 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 820 856 IPR001680 GO:0005515
Lan4g0899 1125 SMART WD40_4 392 434 IPR001680 GO:0005515
Lan4g0899 1125 PANTHER PROTEIN, PUTATIVE-RELATED 1 1125 - -
Lan4g0899 1125 SMART Lish 4 36 IPR006594 GO:0005515
Lan4g0899 1125 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0899 Lan-Chr4 10926800 10938923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0899 428 657 Miscellaneous Gene Families AT5G08390 21.702 2.72e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0899 - - gmx:100793575 2019.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0899 4 10926800 10938923 Lan2g0274 2 2322757 2332430 LSH
Lan4g0899 4 10926800 10938923 Lan8g0338 8 5408442 5414133 PCT
Lan4g0899 4 10926800 10938923 Lan4g1299 4 21789957 21798991 PCT
Lan8g0338 8 5408442 5414133 Lan4g0899 4 10926800 10938923 PCT
Lan4g1299 4 21789957 21798991 Lan4g0899 4 10926800 10938923 PCT