Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0794 ATGTTATCTGCTGGTGTCAAAACTCTTAGTCCTGTTCCAACTGAACCATTCCATACACCATCATGGCCATCATGCTTGTCTTTAGAAGACAAATTCATTTCCATATATCTCTCCTTTTCGGGCTCATTGACCCCGATTCGGGTTATGGAATGTGACACAATTGAGTCTGTTAAATTCAAAATCCAAAGGTATGAGAGCCTGCCTTTCTTAACAAATAAGCAAAAGTTGGTTTATGCTGGCCGCGAATTAGCCCGGAGTGATTCGCTGCTCAAGGATTATGGGATTAAGGATGGAAATGTCTTGCATTTGATCATCAAACTTTCAGATCTTCAGGTCATCAATGTGAAAACTTCATGTGGGAAGGAATTCAAGTTTCAAGTCGAACGAGGTAGGGATGTTGGGTACATAAAGAAACAGATTGCGAAACGCGGGAATGATTTTGCTGATACCGAAGAGCAGGAACTTGTGTGTAAAGGTGAAAGGCTTGAGGATCAAAGGGTTATTGATGATATCTGCAGCAAACACAATGATGCAGTGGTGCATCTTTTTGTTAGAAAAAGGCATGTAAAAGTTCAGAGACGACCGCTCGAGTTGTCCGTTATAGCAACAGAGTTGAGGGATGAGAAAAAAATTGATGTTGGTAAAGAAGGTACTATAACGAAGTATGCCGCTGTTAAAAAAGTTGTGCCGAGAAAGCCTCCTGACAGGGATTACATTTTGGAGCCGGTTATTGTTAATCCTAAAATCCAATTAGCTTCATCAATTTGGGATATGATAAACTCTACATATGATGGACTTGATAGAGGAAACTATCCGATTCAATCAAAGGAGGGAACAGGTGGAGCATACTTTATGATTGATTCGACAGGGCAGAAGTATGTATCTGTTTTTAAGCCTATCGATGAAGAGCCGATGGCTGTGAATAACCCTCGAGGTTTGCCTTTGTCACTAGATGGTGAAGGCTTAAAAAAGGGAACAATAGTTGGTCAAGGAGCATTAAGAGAAGTTGCAGCTTATATTTTGGACCATCCGATGAGTGGCCGCCGTGCACTATTTGGTGATGGCAAGGGATTTGCCGGTGTTCCACCAACACTTATGGTTAAGTGCTTGCATAAAGGATTTAACCATCCGGGAGATTTGACTGCTAAGATAGGATCTATGCAAATGTTCATGGAAAATAATGGAAGCTGTGAAGATATGGGCCCCGGCTCTTTTAAGGTTAAGGAAGTGCATAAAATTTCCGTATTGGATATACGTCTTGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCGGTGCCGAGGAGGACAATGACCAGGCTGTTCTGATTCCGATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCACAAGCACGACAGCCATACTCTGCCGAAACCATTGAGTACATAAACTCATTGGACGCCGAAGAAGATATCGCGCTTTTGAAGTTTCATGGGTGGGATCTGCCAGTTGAATGCGCTTGCACCCTTCGAATATCAACCATGCTTTTGAAGAAAGGCGCAGCGAGAGGAATGACCCCTTTCGCAATCGGAAGCATCATGTGCAGGGAATCCTTGAATAAGGAATCTTTGATTGAGGAAATAGTTCAAGCAGCAATGGATTCTATTCTTCCTGGCACAAGTGAAGCTACATATATGGATTCTGTTTCCGAAATCATGAATCGACGCCTCGATGAAATTGCATGCAGCAGCTCCCTTTTGTAA 1758 0.4243 MLSAGVKTLSPVPTEPFHTPSWPSCLSLEDKFISIYLSFSGSLTPIRVMECDTIESVKFKIQRYESLPFLTNKQKLVYAGRELARSDSLLKDYGIKDGNVLHLIIKLSDLQVINVKTSCGKEFKFQVERGRDVGYIKKQIAKRGNDFADTEEQELVCKGERLEDQRVIDDICSKHNDAVVHLFVRKRHVKVQRRPLELSVIATELRDEKKIDVGKEGTITKYAAVKKVVPRKPPDRDYILEPVIVNPKIQLASSIWDMINSTYDGLDRGNYPIQSKEGTGGAYFMIDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGALREVAAYILDHPMSGRRALFGDGKGFAGVPPTLMVKCLHKGFNHPGDLTAKIGSMQMFMENNGSCEDMGPGSFKVKEVHKISVLDIRLANADRHAGNILLGAEEDNDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSAETIEYINSLDAEEDIALLKFHGWDLPVECACTLRISTMLLKKGAARGMTPFAIGSIMCRESLNKESLIEEIVQAAMDSILPGTSEATYMDSVSEIMNRRLDEIACSSSLL* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0794 585 Pfam Ubiquitin family 38 107 IPR000626 GO:0005515
Lan4g0794 585 Pfam Ubiquitin family 113 187 IPR000626 GO:0005515
Lan4g0794 585 ProSiteProfiles Ubiquitin domain profile. 113 170 IPR000626 GO:0005515
Lan4g0794 585 SMART ubq_7 33 106 IPR000626 GO:0005515
Lan4g0794 585 SMART ubq_7 111 185 IPR000626 GO:0005515
Lan4g0794 585 Gene3D - 27 111 - -
Lan4g0794 585 CDD Ubl_ubiquitin_like 113 183 - -
Lan4g0794 585 Gene3D - 112 198 - -
Lan4g0794 585 SUPERFAMILY Ubiquitin-like 105 187 IPR029071 -
Lan4g0794 585 SUPERFAMILY Protein kinase-like (PK-like) 413 578 IPR011009 -
Lan4g0794 585 SUPERFAMILY Ubiquitin-like 17 107 IPR029071 -
Lan4g0794 585 Pfam Phosphatidylinositol 3- and 4-kinase 278 527 IPR000403 -
Lan4g0794 585 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 581 - -
Lan4g0794 585 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 581 IPR044571 -
Lan4g0794 585 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 269 562 IPR000403 -
Lan4g0794 585 ProSiteProfiles Ubiquitin domain profile. 33 106 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0794 Lan-Chr4 9973912 9976930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0794 2 579 Acyl Lipid Metabolism Gene Families AT5G24240 53.833 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0794 - - gmx:100791631 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0794 4 9973912 9976930 Lan2g0371 2 3635326 3638842 LSH
Lan4g0794 4 9973912 9976930 Lan16g1244 16 20459605 20463028 LSH
Lan4g0794 4 9973912 9976930 Lan11g0647 11 5401581 5404866 PCT
Lan4g0794 4 9973912 9976930 Lan9g0982 9 16617794 16620623 PCT
Lan4g0794 4 9973912 9976930 Lan2g0741 2 15735203 15738422 PCT
Lan11g0647 11 5401581 5404866 Lan4g0794 4 9973912 9976930 PCT
Lan9g0982 9 16617794 16620623 Lan4g0794 4 9973912 9976930 PCT
Lan2g0741 2 15735203 15738422 Lan4g0794 4 9973912 9976930 PCT