Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1244 ATGTCATCTTCTGGTGTCAAAACTCTTAGTCCTGTTCCAACTGAACCATTCCATACACAATCATGCTTGTCTTTCGAAGACAAATTCATTTCCATATATCTCTCGTATTCGGGGTCATTGACTCTGATGCGTGTTATGGAATGCGACACCATTGAGTCTGTGAAGTTCAAAATCCAAAGGTGTGAGAGCCTTCCTTTCTTAACAAACAAGCAGAAGTTGGTTTACGCTGGCCGGGAACTAGCGCGAAGCGGTTCGTTGCTCAAGGATTATGGTGTTACAGATGGGAATGTTTTGCATTTGATAATCAAACTTTCAGATCTTCAGGTCATCAATGTAAAAACTTCTTGTGGGAAGGAATTCACATTTCAGGTGGAACGAGGAAGGGATGTCGGGTACATAAAGAAACGGATTGCGAAAACGGGGGAAGATTTTGCTGATACTGAAGAGCAGGAAATTGTGTGTAAAGGTGAAAGGCTTGAGGATCAAAGGCTTATTGATGATATCTGCAGCAAACATAATGATGCAGTTGTGCACCTTTTTGTTAGAAAAAGGCACGTAAAAGTTCAGAGAAGACCACTTGAGTTGTCCATTTTAGCAACAGAGTCGGATGATGCAGAAAAAATTGATGTTGTTAAAGAAGGTGCCGTAAGGAAGTATGACACCATTCAGCAAGTTGTACCGAGAAGGCCTCCTGATAGAGATTTTATTTTGGAGCCAGTTATTGTTAACCCTAAAATCGGATTAGCATCAGAGATTTGGGATATGATAAACTCTACGTATGATGGACTAGATAAAGGAAACTATCCAATCCGATCAATGGAGGGTACAGGGGGAGCTTACTTTATGCTCGATTCGACGGGGCAGAAGTATGTGTCTGTTTTTAAACCCATTGACGAAGAGCCTATGGCTGTGAATAATCCTCGGGGTTTGCCTTTGTCATTAGATGGTGAAGGTTTGAAGAAGGGTACAATAGTCGGTCAAGGAGCATTCAGGGAAGTTGCAGCATATATTTTGGACCATCCGATTAGTGGTCGCCGCTCATTACTTGGAGACGGAAAGGGCTTTGCTGGAGTTCCACCGACATTTATGGTTAAGTGCTTGCACAAAGGATTTAACCATCCAGGAGATTTGACTGCTAAGATCGGCTCGATGCAAATGTTTGTGGAGAATAGTGGAAGCTGTGAAGATATGGGTCCTGGGGCTTTCCCGGTGAAGGAAGTACATAAGATTTCTGTATTGGACGTGCGACTCGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCGGCATGGTGGACGAGAACGACCAGGCTGTTCTGATTCCGATTGATCATGGATACTGCTTGCCTACAACCTTCGAAGATTGCACCTTTGAATGGCTTTACTGGCCGCAAGCTCGCACGCCATACTCCACCGAATCCGTGAAGTACATAAACTCATTAGACGCTGAAGAAGATATCGCGCTTTTGAAGTTTCATGGATGGGATCTACCCGTTGAATGTTCCCGCACCCTTCGAATCTCAACCATGCTTTTGAAGAAAGCCGTAGCGAGAGGATTGACCCCTTTCACCATCGGCAGTATCATGTGCAGGGAATCCTTGAATAAGGAATCTGTGATCGAGGAAGTAGTACAAGCAGCAAATGATTCTGTTCTTCCGGGCACAAGCGAAGCTACATTTCTGGAATCTGTTTCCGAAATCATGGACCAGCGCCTCGACGAGATCGCAAGCAACTCCCTTTTACAATGGAGTTAG 1755 0.4422 MSSSGVKTLSPVPTEPFHTQSCLSFEDKFISIYLSYSGSLTLMRVMECDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSGSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKKRIAKTGEDFADTEEQEIVCKGERLEDQRLIDDICSKHNDAVVHLFVRKRHVKVQRRPLELSILATESDDAEKIDVVKEGAVRKYDTIQQVVPRRPPDRDFILEPVIVNPKIGLASEIWDMINSTYDGLDKGNYPIRSMEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGAFREVAAYILDHPISGRRSLLGDGKGFAGVPPTFMVKCLHKGFNHPGDLTAKIGSMQMFVENSGSCEDMGPGAFPVKEVHKISVLDVRLANADRHAGNILLGMVDENDQAVLIPIDHGYCLPTTFEDCTFEWLYWPQARTPYSTESVKYINSLDAEEDIALLKFHGWDLPVECSRTLRISTMLLKKAVARGLTPFTIGSIMCRESLNKESVIEEVVQAANDSVLPGTSEATFLESVSEIMDQRLDEIASNSLLQWS* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1244 584 ProSiteProfiles Ubiquitin domain profile. 30 103 IPR000626 GO:0005515
Lan16g1244 584 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 578 IPR044571 -
Lan16g1244 584 Pfam Phosphatidylinositol 3- and 4-kinase 275 525 IPR000403 -
Lan16g1244 584 SUPERFAMILY Ubiquitin-like 25 104 IPR029071 -
Lan16g1244 584 CDD Ubl_ubiquitin_like 110 180 - -
Lan16g1244 584 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 578 - -
Lan16g1244 584 SMART ubq_7 108 182 IPR000626 GO:0005515
Lan16g1244 584 SMART ubq_7 30 103 IPR000626 GO:0005515
Lan16g1244 584 Gene3D - 24 107 - -
Lan16g1244 584 SUPERFAMILY Protein kinase-like (PK-like) 411 576 IPR011009 -
Lan16g1244 584 Gene3D - 108 188 - -
Lan16g1244 584 ProSiteProfiles Ubiquitin domain profile. 110 167 IPR000626 GO:0005515
Lan16g1244 584 Pfam Ubiquitin family 39 104 IPR000626 GO:0005515
Lan16g1244 584 Pfam Ubiquitin family 110 184 IPR000626 GO:0005515
Lan16g1244 584 SUPERFAMILY Ubiquitin-like 106 185 IPR029071 -
Lan16g1244 584 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 266 559 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1244 Lan-Chr16 20459605 20463028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1244 27 578 Acyl Lipid Metabolism Gene Families AT5G24240 55.277 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1244 - - gmx:100791631 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0794 4 9973912 9976930 Lan16g1244 16 20459605 20463028 LSH
Lan2g0371 2 3635326 3638842 Lan16g1244 16 20459605 20463028 LSH
Lan16g1244 16 20459605 20463028 Lan11g0647 11 5401581 5404866 PCT
Lan16g1244 16 20459605 20463028 Lan9g0982 9 16617794 16620623 PCT
Lan16g1244 16 20459605 20463028 Lan2g0741 2 15735203 15738422 PCT
Lan11g0647 11 5401581 5404866 Lan16g1244 16 20459605 20463028 PCT
Lan9g0982 9 16617794 16620623 Lan16g1244 16 20459605 20463028 PCT
Lan2g0741 2 15735203 15738422 Lan16g1244 16 20459605 20463028 PCT