Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0223 ATGAACAAGGTCATGAGGTTGGCTTCAGAAAAGGGTGTGGTGATTTTCACCAAGAGCTCTTGTTGCCTATGCTATGCAGTCAACGTTCTTTTTAAGGAAATTGGAGTAATCCCTTTTGTTTATGAAATAGACAAAGACCCTGAAGGAATGGAAATGGAGAAAGCTATAACAAGGTTAGGTTGCACTGCACCTGTTCCTGCAGTATTCATAGGAGGGAACCTGGTAGGGTCTACCAATGAAGTTATGTCCCTCCACCTCAGTGGTTCACTCATTCCAATGCTCCAACAATGTCAATCTTTATCTTAA 306 0.4183 MNKVMRLASEKGVVIFTKSSCCLCYAVNVLFKEIGVIPFVYEIDKDPEGMEMEKAITRLGCTAPVPAVFIGGNLVGSTNEVMSLHLSGSLIPMLQQCQSLS* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0223 101 CDD GRX_GRXh_1_2_like 13 93 - -
Lan20g0223 101 Pfam Glutaredoxin 13 75 IPR002109 -
Lan20g0223 101 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 100 IPR011905 -
Lan20g0223 101 Gene3D Glutaredoxin 1 101 - -
Lan20g0223 101 SUPERFAMILY Thioredoxin-like 2 97 IPR036249 -
Lan20g0223 101 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Lan20g0223 101 PANTHER GLUTAREDOXIN 1 97 IPR011905 -
Lan20g0223 101 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0223 Lan-Chr20 1494256 1494904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0223 1 100 Miscellaneous Gene Families AT4G15670 51.000 4.96e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0223 K03676 - pop:18111301 166.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0661 8 8799245 8799550 Lan20g0223 20 1494256 1494904 LSH
Lan16g0878 16 15632309 15632611 Lan20g0223 20 1494256 1494904 PCT
Lan20g0223 20 1494256 1494904 Lan4g1052 4 15285032 15285589 PCT
Lan20g0223 20 1494256 1494904 Lan16g0880 16 15637858 15650307 PCT