Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0880 ATGGATAGAGTGAGAGATTTGGCATCAAAGAAAGCAGCAGTTATATTTACAAAGAGTTCATGTTGCATGTGCCATAGCATTAAGCAACTATTCTATGAACTTGGAGCAAGTCCTGAAGTACATGAACTTGACAATGATTCCTATGGGAAAGAAATGGAATGGGCTATAAGAAGTTTGGGATGTAACCCTTCAGTTCCAGCAGTATTCATAGGTGGAAGATTTGTAGGTTCATCAAAAGATATGATTTCTCTTCATGTTGATGGCTCTCTCAAACAAATGCTTATGGATGCAAAAGCCATTTGGCTTTAG 309 0.3786 MDRVRDLASKKAAVIFTKSSCCMCHSIKQLFYELGASPEVHELDNDSYGKEMEWAIRSLGCNPSVPAVFIGGRFVGSSKDMISLHVDGSLKQMLMDAKAIWL* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0880 102 PANTHER GLUTAREDOXIN-C1 PROTEIN 1 101 - -
Lan16g0880 102 Pfam Glutaredoxin 14 75 IPR002109 -
Lan16g0880 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Lan16g0880 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Lan16g0880 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Lan16g0880 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Lan16g0880 102 Gene3D Glutaredoxin 1 100 - -
Lan16g0880 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Lan16g0880 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 102 IPR011905 -
Lan16g0880 102 CDD GRX_GRXh_1_2_like 12 93 - -
Lan16g0880 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0880 Lan-Chr16 15637858 15650307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0880 1 102 Miscellaneous Gene Families AT4G15700 50.980 1.30e-36 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0880 K03676 - gmx:100788094 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1052 4 15285032 15285589 Lan16g0880 16 15637858 15650307 LSH
Lan16g0880 16 15637858 15650307 Lan8g0660 8 8794274 8794822 PCT
Lan16g0880 16 15637858 15650307 Lan20g0224 20 1497455 1498282 PCT
Lan8g0661 8 8799245 8799550 Lan16g0880 16 15637858 15650307 PCT
Lan20g0223 20 1494256 1494904 Lan16g0880 16 15637858 15650307 PCT