Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1315 ATGATGGTGGATACCTCAACTATTGGGCGGTTCCACCACCAAAAACTCGACTTTAAGCGATGGGTTCCAATATTATTAACCTCCTACAAGACCCTTTTCACGGTTCTATGGATCGCGGCATTCGCGTCGATTTTCGTGTGGCAGAGGAACATAGTCGGTGGTTTATTTGTGTTCGGTCGTGCCACGGCGGCGAGGCCCGTACCGAAGCTGAGGCCGGTGGCTTTCAATTTGACGGATTTCGGAGGGGTTGGTGATGGGGTTACTCTTAACACTGAAGCATTTGAGAGGGCAATTTCGGCAATATCTAAATTAGGGAAGAAGGGTGGTGGCCAGCTTAATGTTCCTCCGGGTCGATGGCTTACGGCGCCGTTTAATCTTACCAGTCATATGACTCTATTTCTAGCTGAAGATGCTGTTATACTTGGACTTGATGATGAAAAGTATTGGCCACTAATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATACGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAATGGCACCATAAACGGACAAGGACAAGCGTGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAATATTACAATGCGTGACTCTCCTTTTTGGACTCTTCATCCATATGACTGCAGGAACATTACAATAAAACATGTTACAATACTGGCTCCTGTATTCGAAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTACGGGAGATGACGCAATTGCGATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCAAGAATATAATGATCAGAAACCTTGTTGTTCGCTCTATGGTCAGTGCGGGCGTGTCAATAGGCAGTGAGATGTCTGGTGGGGTATTCAACGTCACTGTGGAGAATCTTCTTGTGTGGGACTCTAGACGTGCGGTGAGGATTAAGACTGCTCCTGGGCGTGGTGGATATGTGCGTCAAATAACTTATCGAAATCTAACATTTGAGAATGTCCGCGTTGGAATTGTCATGAAGACAGATTACAATGAACACCCTGATAATGGGTATGACCCTACAGCACTTCCAGTACTCAAAGACATAAGCTTCACTTCCGTCCATGGCCACGGAGTCCGTGTGCCGGTTCGTATTCATGGTAGTGAAGAGATTCCTGTGAGGAATGTGACTTTTCATGATATGTCAGTTGGGCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCCTTTGTTCAAGGCCGCGTAATCGGGACCATCTTTCCGGCTCCATGTGTGAACCTTGATCGTTACAATGAGCAAGGACAGCTGGTCGAGCATTCTGCATCCCAGAATGTAACGGATATAGATTATGATTTTTGA 1482 0.4575 MMVDTSTIGRFHHQKLDFKRWVPILLTSYKTLFTVLWIAAFASIFVWQRNIVGGLFVFGRATAARPVPKLRPVAFNLTDFGGVGDGVTLNTEAFERAISAISKLGKKGGGQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITMRDSPFWTLHPYDCRNITIKHVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSKNIMIRNLVVRSMVSAGVSIGSEMSGGVFNVTVENLLVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDNGYDPTALPVLKDISFTSVHGHGVRVPVRIHGSEEIPVRNVTFHDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCVNLDRYNEQGQLVEHSASQNVTDIDYDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1315 493 Pfam Glycosyl hydrolases family 28 170 452 IPR000743 GO:0004650|GO:0005975
Lan1g1315 493 SMART pbh1 395 417 IPR006626 -
Lan1g1315 493 SMART pbh1 361 382 IPR006626 -
Lan1g1315 493 SMART pbh1 422 443 IPR006626 -
Lan1g1315 493 SMART pbh1 242 269 IPR006626 -
Lan1g1315 493 SMART pbh1 304 326 IPR006626 -
Lan1g1315 493 SMART pbh1 332 353 IPR006626 -
Lan1g1315 493 SMART pbh1 270 291 IPR006626 -
Lan1g1315 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 491 - -
Lan1g1315 493 PANTHER PECTIN LYASE-RELATED 22 491 - -
Lan1g1315 493 Gene3D - 60 455 IPR012334 -
Lan1g1315 493 SUPERFAMILY Pectin lyase-like 65 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1315 Lan-Chr1 22854276 22864678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1315 10 492 Glycoside Hydrolase AT1G19170 75.152 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1315 - - gmx:100818529 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1315 1 22854276 22864678 Lan1g0442 1 3557351 3563446 LSH
Lan1g1315 1 22854276 22864678 Lan15g0187 15 2000675 2003690 PCT
Lan1g1315 1 22854276 22864678 Lan14g0105 14 1386712 1390552 PCT
Lan15g0187 15 2000675 2003690 Lan1g1315 1 22854276 22864678 PCT
Lan14g0105 14 1386712 1390552 Lan1g1315 1 22854276 22864678 PCT