Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0187 ATGCATGACTTGAAACATTTGTTTCCATCAGCCTCTACCCTCTTTACTTTTCTTTGGATTGCTGTGTTTACTTCAGTTTTCTTGTGGCAGAAGATTGCAATTGGTGGCTACTTTGTGTTTCAAGATGGTACCCCTTTAAGGACATTGTTACCTATGCTAAGGCCAGTGGCTTTTAATTTGATAGATTTTGGAGGGGTTGGTGATGGAGTTACCCTTAACACTAAGGCCTTTGAGAGGGCTGTTTCTGAAATCTCTAAGTTAAGGGACAAAGGTGGTGGTCAGCTTAATGTTCCACCTGGTCTTTGGCTTACAGCACCCTTTAATCTTACAAGTCATATCACTCTTTTTCTAGCTCAAGATGCTGTCATACTTGGAATTCAGGATGAAAAGTATTGGCCACTAATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCACATTGGGCCTCGTTATAGCAGCTTGATTCATGGTCAAAATCTTAGAGATGTTGTAATAACAGGACATAATGGTAGCATAAATGGACAAGGACAAACATGGTGGACAAAACATCTTCATAAGCTTCTTAACTACACAAGAGGTCCACTTGTTCAGCTTATGTGGTCTAGTGACATTGTCATCTCTAACATTACTTTGCGCGATTCTCCGTTTTGGACACTTCATCCATATGATTGCAAGAATGTTACTATAAAAAATGTTACAATATTGGCTCCTGTATATAAAGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTGTGGGGGATGATGCTATTGCAATAAAAAGTGGCTGGGATCAATATGGAATTGCTTATGGAAAACCTTCCAGAAATATAGTAATCCGAAACCTCGTCGTTCGCTCGAATGTCAGTGCTGGAATCTCAATAGGAAGTGAGATGTCTGGTGGTGTATCCAATGTCACAATAGAGAACATTCTTGTATGGAACTCAAGGCGTGCCATAAGGATCAAAACCGCTCCGGGAAGAGGCGGATATGTGTCCCAAATAACATACAGGAATCTAACTTTTAACAACGTATCAGTCGGAATTGTTATCAAGACTGATTACAATGAGCACCCTGATGCTAGATACGACCCGAAAGCACTTCCAGTAATCAAAGATATAAGTTTCACCAATGTTCGTGGCAAGGAAGTTAAAGTACCAGTAAGAATTCAAGGCAGTGAAGAAATTCCGATTCGAAATGTGACTTTTCATGATATGGTAGTTGAGATAACCAAACAGAAAAAACATATCTTCCAATGTGCCTTTGTTCAAGGTCAAGTAATAGGTACTATTTTTCCTGCTCCTTGTGAGAACTTTGATCAGTACAATGAGCAAGGACAACTAGTTAAGCATTCAAGTACTTACAATGTAACAAATATAGATTATGGAATTTGA 1431 0.3934 MHDLKHLFPSASTLFTFLWIAVFTSVFLWQKIAIGGYFVFQDGTPLRTLLPMLRPVAFNLIDFGGVGDGVTLNTKAFERAVSEISKLRDKGGGQLNVPPGLWLTAPFNLTSHITLFLAQDAVILGIQDEKYWPLMPPLPSYGYGREHIGPRYSSLIHGQNLRDVVITGHNGSINGQGQTWWTKHLHKLLNYTRGPLVQLMWSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYKAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWNSRRAIRIKTAPGRGGYVSQITYRNLTFNNVSVGIVIKTDYNEHPDARYDPKALPVIKDISFTNVRGKEVKVPVRIQGSEEIPIRNVTFHDMVVEITKQKKHIFQCAFVQGQVIGTIFPAPCENFDQYNEQGQLVKHSSTYNVTNIDYGI* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0187 476 PANTHER PECTIN LYASE-RELATED 9 474 - -
Lan15g0187 476 Gene3D - 47 439 IPR012334 -
Lan15g0187 476 SMART pbh1 344 365 IPR006626 -
Lan15g0187 476 SMART pbh1 225 252 IPR006626 -
Lan15g0187 476 SMART pbh1 315 336 IPR006626 -
Lan15g0187 476 SMART pbh1 287 309 IPR006626 -
Lan15g0187 476 SMART pbh1 253 274 IPR006626 -
Lan15g0187 476 Pfam Glycosyl hydrolases family 28 153 435 IPR000743 GO:0004650|GO:0005975
Lan15g0187 476 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 9 474 - -
Lan15g0187 476 SUPERFAMILY Pectin lyase-like 45 450 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0187 Lan-Chr15 2000675 2003690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0187 4 476 Glycoside Hydrolase AT1G19170 71.753 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0187 - - adu:107479176 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0187 15 2000675 2003690 Lan14g0105 14 1386712 1390552 LSH
Lan1g1315 1 22854276 22864678 Lan15g0187 15 2000675 2003690 PCT
Lan1g0442 1 3557351 3563446 Lan15g0187 15 2000675 2003690 PCT
Lan15g0187 15 2000675 2003690 Lan1g1315 1 22854276 22864678 PCT
Lan15g0187 15 2000675 2003690 Lan1g0442 1 3557351 3563446 PCT