Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0105 ATGGTAGAATACACAACAATACATAAAAAAGTGCATGATTTGAAGCATTTGTTTCCATCATCATTTACACTCTTTACTTTTCTATGGATTGCTGTGTTTGCTTCAGTTTTCTTATGGCAAAGAAATGCAATTGGTGGGTACTTTGTGGTAATGGATGGTAATCCTATAAGGACATTACCCTTGCTAAGGCCAGTGGATTTTAATTTAATAGATTTTGGAGGGGTTGGTGATGGTGTTACTATAAACACAATGGCTTTTGAAAAAGCTGTTTTTGAAATATCAAAGTTAAGAGAGAAAGGTGGTGGCCAGCTTAATGTGCCATCTGGTTTTTGGCTTACAGCACCCTTTAATCTTACTAGTCATATGACTCTTTTTCTGGCTCAAGATGCTGTTATACTTGGAATTCAGGATGAAAAGTATTGGCCATTGATGCCTCCATTACCTTCATATGGGTATGGGAGAGAGCACCTAGGACCTAGATATAGCAGTTTGATTCATGGACATAATGGTAGCATAAATGGACAAGGACAAATGTGGTGGACTAAATATCTTCATAAGGTTCTAAATCACACAAGGGGCCCACTTGTTCAGCTTATGTGGTCTAGTAACATTATAATCTCTAATATTACTTTGCTTGATTCACCTTTTTGGACACTTCATCCCTATGATTGCAAAAATGTTACAATAAAAAATGTTACCATATTGGCTCCTATATATAAAGCTCCAAATACTGATGGCATAGATCCTGATTCATGTGAAGATATGTTGATAGAGGATTGTTACATAAGTGTGGGGGATGATGCTATTGCAATAAAAAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAGAAACATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTCAGTGCTGGCATCTCAATTGGTAGTGAAATGTCTGGTGGAGTATCCAATATCACAATAGAAAACATTCTTGTATGGAACTCAAGGCGTGCTATAAGGATCAAAACCGCTCCGGGAAGAGGTGGATATGTATCCCAAATAACATACAAGAATCTAACTTTCAACAATGTTCGAGTCGGAATTGTTATAAAAACTGATTACAATCAACACCCTGATACTAAATATGACTCGAATGCGCTTCCCATACTTAAAGACATAAGTTTCACCAATATTCGCGGAAAAGGAGTTAAAGTAGCAGTAAGAATTCAAGGTAGTAAAGAGATTCCAATTAGAAATGTAACATTTAATGATATGTTAGTTGGGATAACAAAAAAGAAGAAGCATATATTTCAATGTGCATTTGTTGAAGGTAGGGTAATAGGTACAATATTTCCTGCTCCTTGTGGTAACTTTGATCAGTACAATGAGCAAGGGAAGTTGATTAAGCATTCAAGTTTTTACAATGTAACAGATATAGATTATGAAATTTGA 1428 0.3592 MVEYTTIHKKVHDLKHLFPSSFTLFTFLWIAVFASVFLWQRNAIGGYFVVMDGNPIRTLPLLRPVDFNLIDFGGVGDGVTINTMAFEKAVFEISKLREKGGGQLNVPSGFWLTAPFNLTSHMTLFLAQDAVILGIQDEKYWPLMPPLPSYGYGREHLGPRYSSLIHGHNGSINGQGQMWWTKYLHKVLNHTRGPLVQLMWSSNIIISNITLLDSPFWTLHPYDCKNVTIKNVTILAPIYKAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNITIENILVWNSRRAIRIKTAPGRGGYVSQITYKNLTFNNVRVGIVIKTDYNQHPDTKYDSNALPILKDISFTNIRGKGVKVAVRIQGSKEIPIRNVTFNDMLVGITKKKKHIFQCAFVEGRVIGTIFPAPCGNFDQYNEQGKLIKHSSFYNVTDIDYEI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0105 475 Gene3D - 57 437 IPR012334 -
Lan14g0105 475 SUPERFAMILY Pectin lyase-like 56 448 IPR011050 -
Lan14g0105 475 Pfam Glycosyl hydrolases family 28 169 432 IPR000743 GO:0004650|GO:0005975
Lan14g0105 475 PANTHER PECTIN LYASE-RELATED 16 473 - -
Lan14g0105 475 SMART pbh1 314 335 IPR006626 -
Lan14g0105 475 SMART pbh1 286 308 IPR006626 -
Lan14g0105 475 SMART pbh1 252 273 IPR006626 -
Lan14g0105 475 SMART pbh1 343 364 IPR006626 -
Lan14g0105 475 SMART pbh1 224 251 IPR006626 -
Lan14g0105 475 SMART pbh1 382 403 IPR006626 -
Lan14g0105 475 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 16 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0105 Lan-Chr14 1386712 1390552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0105 14 475 Glycoside Hydrolase AT3G42950 68.172 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0105 - - pavi:110749193 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0187 15 2000675 2003690 Lan14g0105 14 1386712 1390552 LSH
Lan1g1315 1 22854276 22864678 Lan14g0105 14 1386712 1390552 PCT
Lan1g0442 1 3557351 3563446 Lan14g0105 14 1386712 1390552 PCT
Lan14g0105 14 1386712 1390552 Lan1g1315 1 22854276 22864678 PCT
Lan14g0105 14 1386712 1390552 Lan1g0442 1 3557351 3563446 PCT