Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0442 ATGATGGTGGATACTTCAACGCTTGGTCGATTCCACTACCAAAGACTCGACTTTAAGCGTTGGGTTCCAATATTATTAACTTCCCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCATTTGCGTCGGTTTTCGTGTGGCAGAGGAGCATAGTCGGTGGTTTCTTAGTGTTTGGCCGTGTCACGGTGGCGGCGAGGCCCATACCGAAGCTGAGACCGGTGGCTTTCAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTGAACACTGAAGCATTTGAGAGGGCAATTTCGGCAATATCTAAATTAGGGAAGAAAGGTGGTGGCCAGATTAATGTGCCTCCGGGGCGTTGGCTTACGGCGCCGTTTAATCTTACCAGTCATATGACTCTATTTCTAGCTGAAGATGCTGTTATACTTGGACTTGATGATGAAAAGTATTGGCCACTAATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCCGGGCCTCGATATGGCAGTTTGATTCATGGCCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAGCGTGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCATACAAGGGGCCCACTTGTTCAGTTCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTCTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAGAACATTACAATAAAACATGTTACGATACTGGCTCCTGTATTCAAAGCTCCAAACACAGATGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTACGGGAGATGACGCAATTGCGATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCAAGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCGTGTCAATAGGCAGTGAAATGTCTGGTGGGGTATTCAATGTCACAGTGGAGAACCTTCATGTATGGGACTCTAGACGTGCGGTTAGGATTAAGACTGCTCCTGGACGTGGTGGATATGTGCGCCAAATAACTTACCGGAATCTAACATTTGAGAATGTCCGTGTCGGAATTGTTATGAAGACAGATTATAATGAACACCCTGATGATGGGTATGACCGTACAGCACTTCCAATACTCAAAGACATAAGCTTTACCACCGTCCATGGTCGTGGTGTCCGAGTGCCGGTACGTATTCATGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTCAGGATATGTCAATTGGGCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCCTTTGTCCAAGGCCGCGTAATCGGAGCCATTTTTCCTGCTCCCTGTGAGAACCTTGATCGATACAATGAGCAAGGAAAGTTGGTCAAGCATTCTGCATCTCATAATGTAACAGATATAGATTATGATTTTTGA 1485 0.4519 MMVDTSTLGRFHYQRLDFKRWVPILLTSHKTLFTVLWIAAFASVFVWQRSIVGGFLVFGRVTVAARPIPKLRPVAFNLTDFGGVGDGVTLNTEAFERAISAISKLGKKGGGQINVPPGRWLTAPFNLTSHMTLFLAEDAVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQFMWSSDIVISNITLRDSPFWTLHPYDCKNITIKHVTILAPVFKAPNTDGIDPDSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSKNIMIRNLVVRSMVSAGVSIGSEMSGGVFNVTVENLHVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDRTALPILKDISFTTVHGRGVRVPVRIHGSEEIPVRNVTFQDMSIGLTYKKKHIFQCAFVQGRVIGAIFPAPCENLDRYNEQGKLVKHSASHNVTDIDYDF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0442 494 Gene3D - 61 456 IPR012334 -
Lan1g0442 494 SUPERFAMILY Pectin lyase-like 60 467 IPR011050 -
Lan1g0442 494 PANTHER PECTIN LYASE-RELATED 22 492 - -
Lan1g0442 494 SMART pbh1 305 327 IPR006626 -
Lan1g0442 494 SMART pbh1 362 383 IPR006626 -
Lan1g0442 494 SMART pbh1 271 292 IPR006626 -
Lan1g0442 494 SMART pbh1 333 354 IPR006626 -
Lan1g0442 494 SMART pbh1 243 270 IPR006626 -
Lan1g0442 494 Pfam Glycosyl hydrolases family 28 171 453 IPR000743 GO:0004650|GO:0005975
Lan1g0442 494 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0442 Lan-Chr1 3557351 3563446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0442 10 493 Glycoside Hydrolase AT1G19170 76.210 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0442 - - gmx:100818529 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0442 1 3557351 3563446 Lan1g0442 1 3557351 3563446 ECH
Lan1g1315 1 22854276 22864678 Lan1g0442 1 3557351 3563446 LSH
Lan1g0442 1 3557351 3563446 Lan15g0187 15 2000675 2003690 PCT
Lan1g0442 1 3557351 3563446 Lan14g0105 14 1386712 1390552 PCT
Lan15g0187 15 2000675 2003690 Lan1g0442 1 3557351 3563446 PCT
Lan14g0105 14 1386712 1390552 Lan1g0442 1 3557351 3563446 PCT