Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1009 ATGTCACTCAGTGAGCGTAAAACCATCGATTTGGAACAAGGATGGGATTTTATGCACAAAGGAATCACAAAACTCAAGAACATTCTAGAAGGCCTTCCTGAACCTCAATTCAGTTCTGAGGATTATATGATGCTTTATACAACCATCTATAATATGTGTACTCAAAAGCCTCCTCATGATTATTCCCAACAACTTTATGACAAGTACAGGGAATCTTTTGAAGAGTATATCTTATCAACTGTATTACCTTCATTGAGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTGAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGGTCACTGCCGGCCCTTAATGAAGTTGGGTTGACCTGCTTTCGTGACTTGGTTTACAAGGAACTAAACTGGAATGTGAGAGATGCAGTTATTTCTCTTATTGATCAAGAACGCGAGGGAGAGCAAATTGATCGAGCTCTATTGAAGAACGTATTGGATATATTTGTTGAAATTGGAATGGGGCAAATGGATCATTATGAAAATAAATTTGAAGCTGTCATGCTGAAAGACACCTCTGCTTATTATTCTCGGAAGGCTTCAAATTGGATCTTAGAAGATTCTTGTCCTGATTATATGCTTAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGCAGTGAGCCAAAGTTACTCGAGAAAGTTCAACATGAGCTGTTATCCGTATATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCATTGCTCAGGGATGACAAGGTTGAAGATTTGTCAAGAATGTTCAGGCTATTTTCTAAGACACCTCGAGGCTTAGATCCTATTTCGAGTATATTTAAGCAGCATGTTACCACTGAAGGTATGGCACTGGTGAAGCTTGCTGAAGATGCAGCTAGTAACAAAAAGCCAGATAAAAAGGATATCATTGGTCTGCAAGAGCAGGTTTTTGTTCGGAAAGTAATTGATCTGCATGATAAGTACCTGACATATGTGAATGATTGTTTCCAGAATCATACACTTTTCCACAAGGCACTTAAGGAAGCTTTTGAGATCTTTTGTAACAAGGGTGTTGCCGGAAGCTCAAGTGCGGAACTGCTTGCCACTTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGCGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTTAAGCTGCTCGCTTATATTAGCGACAAAGACTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTCGAAGGCTTCTTTTTGACAAGAGTGCCAATGATGACCATGAGAGAAGTATTTTAACAAAATTGAAGCAACAATGTGGTGGACAGTTTACTTCAAAGATGGAAGGAATGGTTACAGATCTGACACTGGCTAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGTAATAATACTGCAGACCCTGGAATAGACTTGACTGTTACCGTTCTAACAACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCGGTGGAAATGGTTAGGTGCGTTGAAGTTTTCAAGGAGTTTTATCAAACTAAAACAAAGCACAGAAAACTCACATGGATCTACTCCTTGGGTACCTGTAATATAATTGGGAAATTTGAGCCAAAAACTGTGGAACTGATTGTCACAACCTACCAGGCTTCAGCATTGCTGCTTTTTAATTCTGCAGATAGGCTGAGTTATTCAGAGATAATGACTCAGTTAAACTTATCAGATGATGATGTTATTAGATTGCTTCACTCCTTGTCATGTGCCAAGTACAAGATTCTTAACAAGGAACCGAACACAAAAACAATATCTTCTACCGATTATTTTGAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTGATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAAAGTCGTAAACTTTTGGGCTACCAACACTTAGTTGTGGAATGTGTTGAGCAGTTGGGTCGAATGTTCAAGCCTGATGTCAAGGCAATTAAAAAGCGGATTGAAGACTTGATTTCTCGAGATTACTTGGAAAGGGACAAAGATAATGCAAATATGTTCAAGTACTTGGCCTGA 2232 0.3875 MSLSERKTIDLEQGWDFMHKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYILSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYKELNWNVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENKFEAVMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKTPRGLDPISSIFKQHVTTEGMALVKLAEDAASNKKPDKKDIIGLQEQVFVRKVIDLHDKYLTYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNTADPGIDLTVTVLTTGFWPSYKSFDLNLPVEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNIIGKFEPKTVELIVTTYQASALLLFNSADRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKLLGYQHLVVECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1009 743 Gene3D - 660 743 IPR036388 -
Lan1g1009 743 Gene3D Cullin Repeats 142 263 - -
Lan1g1009 743 Gene3D Cullin Repeats 390 503 - -
Lan1g1009 743 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Lan1g1009 743 Pfam Cullin family 24 646 IPR001373 GO:0006511|GO:0031625
Lan1g1009 743 Gene3D Cullin; Chain C, Domain 2 506 659 - -
Lan1g1009 743 Gene3D Cullin Repeats 267 389 - -
Lan1g1009 743 SMART Cullin_Nedd8_2 670 737 IPR019559 -
Lan1g1009 743 Gene3D Cullin Repeats 4 141 - -
Lan1g1009 743 ProSiteProfiles Cullin family profile. 389 618 IPR016158 -
Lan1g1009 743 SMART cul_2 420 568 IPR016158 -
Lan1g1009 743 SUPERFAMILY "Winged helix" DNA-binding domain 658 743 IPR036390 -
Lan1g1009 743 PANTHER CULLIN 3B 2 742 - -
Lan1g1009 743 PANTHER CULLIN 2 742 IPR045093 -
Lan1g1009 743 SUPERFAMILY Cullin homology domain 388 656 IPR036317 -
Lan1g1009 743 Pfam Cullin protein neddylation domain 673 735 IPR019559 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1009 Lan-Chr1 20496489 20504805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1009 K03347 - gmx:100793682 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1286 12 18636525 18643967 Lan1g1009 1 20496489 20504805 LSH
Lan1g1009 1 20496489 20504805 Lan1g0048 1 259193 267409 LSH
Lan1g1009 1 20496489 20504805 Lan19g0556 19 9169484 9180065 PCT
Lan16g0485 16 4997100 5007791 Lan1g1009 1 20496489 20504805 PCT
Lan19g0556 19 9169484 9180065 Lan1g1009 1 20496489 20504805 PCT