Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1286 ATGAGTGAGCGTAAAACTATTGACTTGGAACAAGGATGGGATTTTATGCACAAAGGCATCACCAAGCTCAAGAACATTCTAGAAGGCCTTCCTGAGCCTCAGTTTAGCTCCGAGGACTATATGATGCTTTACACAACTATCTATAATATGTGCACTCAAAAACCCCCTCATGATTATTCCCAACAACTTTATGACAAGTACAGGGAGTCTTTTGAAGAGTACATTTTATCAACTGTGTTACCTTCTTTGAGAGAAAAGCATGATGAGTTTATGTTGAGAGAACTTGTGAAGAGGTGGGCAAACCATAAAATTATGGTGAGGTGGCTTTCTCGTTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGGTCACTGCCACCCCTCAATGAAGTTGGACTGACTTGCTTTCGTGACTTGGTTTACAAGGAACTAAATGGGAAAGTGAGAGATGCAGTTATTTCTCTTATTGATCAAGAACGTGAGGGAGAGCAGATTGATCGAGCTCTATTAAAGAATGTATTAGGTATATTTGTTGAAATTGGAATGGGGCAAATGGATCATTATGAGAATGATTTTGAAGCTGTCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTTAAGGCTGAGGAGTGCTTAAAACGAGAGAAAGATAGGGTTGCTCATTACTTACACTCTAGCAGTGAGCCAAAATTATTAGAGAAAGTTCAGCATGAGCTGTTATCTGTGTATGCGAACCAACTCCTCGAGAAAGAACACTCTGGATGTCATGCATTACTCAGAGATGACAAGGTCGGAGATTTGTCAAGGATGTTCAGGTTATTTTCTAAAATACCCCGTGGCTTAGATCCCGTTTCTACTATATTTAAGCAGCATGTGACCACTGAAGGTATGGCATTGGTGAAGCTGGCAGAAGATGCTGCAAGTAACAAAAAGCCAGATAAAAAGGATATTGTTGGTCTGCAGGAGCAGGTATTTGTTCGGAAGGTGATTGAGCTGCACGATAAGTACGTGGCATATGTGAACGACTGTTTCCAGAATCATACTCTTTTCCACAAGGCACTCAAGGAAGCTTTTGAGATCTTTTGCAACAAGGGTGTTGCTGGAAGCTCAAGTGCAGAATTGCTTGCCACTTTTTGTGATAACATTCTGAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATCGAAGAAACTCTTGAAAAGGTGGTCAAGTTGCTCGCTTATATTAGCGACAAAGACTTGTTTGCTGAGTTTTACAGGAAGAAGCTTGCTCGAAGGCTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAGAAGTATTTTGACAAAATTAAAGCAACAATGTGGTGGACAGTTTACATCCAAGATGGAAGGAATGGTTACAGATTTGACCCTGGCTAAGGAGAATCAAACTAGCTTTGAGGAGTATCTAAGTAATAATACTAATGCAGATCCTGGAATAGACTTAACAGTTACAGTTCTGACAACTGGCTTTTGGCCTAGTTACAAATCTTTTGACCTCAATCTTCCAGCAGAAATGGTTAGGTGCGTTGAGGTTTTCAAAGAGTTTTATCAAACTAAAACAAAGCACAGAAAACTTGCATGGATTTACTCCTTGGGTACCTGCAATATAATTGGGAAATTTGAACCAAAAAACGTGGAGCTGATTGTTACAACCTACCAGGCTTCGGCATTACTGCTTTTTAATTCCTCAGATAGACTGAGTTATTCAGAGATAATGACTCAATTGAACTTATCGGATGACGATGTTATTAGACTGCTCCATTCCTTGTCATGTGCCAAGTACAAGATTCTTATCAAGGAGCCAAACACAAAAACAATATCCCCTACTGATTATTTTGAATTTAATTCAAAGTTCACTGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAAGTGATTGAGGATGTGGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTTTTGGGCTACCAACAGTTAGTTGTGGAGTGTGTTGAGCAGTTGGGTCGCATGTTTAAGCCTGATGTGAGGGCAATTAAAAAGCGGATTGAAGACTTGATTTCTCGAGATTACTTGGAAAGAGACAAAGATAATGCAAATATGTTCAGGTACTTAGCTTGA 2229 0.3961 MSERKTIDLEQGWDFMHKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYILSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLGIFVEIGMGQMDHYENDFEAVMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVGDLSRMFRLFSKIPRGLDPVSTIFKQHVTTEGMALVKLAEDAASNKKPDKKDIVGLQEQVFVRKVIELHDKYVAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNTNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLAWIYSLGTCNIIGKFEPKNVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILIKEPNTKTISPTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVVECVEQLGRMFKPDVRAIKKRIEDLISRDYLERDKDNANMFRYLA* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1286 742 Gene3D Cullin Repeats 265 387 - -
Lan12g1286 742 Gene3D Cullin Repeats 2 139 - -
Lan12g1286 742 SUPERFAMILY Cullin repeat-like 9 382 IPR016159 -
Lan12g1286 742 Gene3D - 659 742 IPR036388 -
Lan12g1286 742 Gene3D Cullin; Chain C, Domain 2 505 658 - -
Lan12g1286 742 Pfam Cullin family 22 645 IPR001373 GO:0006511|GO:0031625
Lan12g1286 742 Pfam Cullin protein neddylation domain 672 734 IPR019559 -
Lan12g1286 742 Gene3D Cullin Repeats 388 502 - -
Lan12g1286 742 SMART Cullin_Nedd8_2 669 736 IPR019559 -
Lan12g1286 742 Gene3D Cullin Repeats 140 259 - -
Lan12g1286 742 PANTHER CULLIN 3B 2 741 - -
Lan12g1286 742 SUPERFAMILY "Winged helix" DNA-binding domain 656 742 IPR036390 -
Lan12g1286 742 SMART cul_2 418 567 IPR016158 -
Lan12g1286 742 ProSiteProfiles Cullin family profile. 387 617 IPR016158 -
Lan12g1286 742 PANTHER CULLIN 2 741 IPR045093 -
Lan12g1286 742 SUPERFAMILY Cullin homology domain 386 655 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1286 Lan-Chr12 18636525 18643967 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1286 K03347 - gmx:100793682 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1286 12 18636525 18643967 Lan1g1009 1 20496489 20504805 LSH
Lan12g1286 12 18636525 18643967 Lan1g0048 1 259193 267409 LSH
Lan12g1286 12 18636525 18643967 Lan19g0556 19 9169484 9180065 PCT
Lan16g0485 16 4997100 5007791 Lan12g1286 12 18636525 18643967 PCT
Lan19g0556 19 9169484 9180065 Lan12g1286 12 18636525 18643967 PCT