Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0485 ATGTCTCTTCCCACAAAACGTTCTTCCACCACTTCTTCTTCTTCTTCTTCTTCCGCCGCCGCTGCCGCCACCGTCAACAACCCTATGAAAAAGGCCAAGCCCCACGCTCCTTTACACGACGCCGTTTTTGATCCTTCATCTATGGCCATCGACGACGATCTCAAACCTTCTTCTAACGAATCTACCGCACCCTCTCGCGGCCTCGTCGCCGCCAATCTCGCTCGCAAGAAATCTACCCCTCCTCAGCCCGCTAAGAAACTTCTTATCAAGCTTCATAAAGCTAAACCAACATTACCCACAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCTGCTATTTGTGCTATATTCTTGAAGCAACCTGATTCTTGTGACTTGGAGCTGCTTTATCAGGCTGTGAGTGATCTTTGCCTTTATAAAATGGGTGGAAATCTCTATCAACGGATTGAAAAGGAATGTGAAGCACACATATCTGCAGCACTGCAGTCTTTGGTTGGCCAAAGTCCGGATTTAGTTGTTTTTCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGCGGTATAGCCTTGTATCTGGATAGGACATATGTGAAGCAAACACCCAATGTACGGTCATTGTGGGACATGGGCTTACAACTTTTCCGCAAACACCTTTCATTATCTTCTGAAGTAGAACACAAAACTGTTACCGGTCTTCTACGAATGATTGAAAGTGAAAGATTAGGTGAAGCAGTGGACAGAACTCTTCTAAATCATCTTTTGAAGATGTTTACTGCACTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTATGAAATACATGCAGCAATCAGATGTTCCAGATTATTTGAAGCATGTTGAGACAAGATTGCAAGAGGAACATGAAAGATGCTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAGCAACTTCTTGAACGTCATATACCTGCTATTCTTGATAAGGGTTTCTCTATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATATACTCACTCTTTTCAAGGATCAGTGCACTTGAATCACTGAGGCAGGCCCTTAGTTCATATATCAGGAAAACTGGGCAGGGCATTGTTATGGATGAAGAGAAAGAAAAAGATATGGTTTCATCCCTTCTGGATTTTAAGGCTTCTCTTGATACAATATGGGAAGCAAGCTTTTTCAAGAATGAAGCTTTCAGTAACACCATTAAAGAAGCATTTGAGCATCTTATCAATCTTCGCCAGAATCGACCGGCTGAGTTGATTGCCAAGTTTTTGGATGAGAAGCTTCGTGCAGGTAACAAGGGTACTTCTGAAGAAGAATTGGAGGGTATGCTTGATAAAGTCCTGGTTTTATTCAGGTTCATTCAGGGCAAGGATGTTTTTGAAGCATTCTATAAGAAAGATCTTGCAAAAAGACTGCTTTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGTTGAAGACTGAGTGTGGCAGCCAGTTCACAAACAAACTGGAAGGGATGTTTAAGGACATTGAATTATCAAGAGAGATAAATGATTCCTTCAAACAGTCATCCCAGGCAAGGTCAAAACTCCCATCAGGGATCGAAATGAGTGTTCATGTCTTGACGACGGGGTACTGGCCAACATATCCACCCATGGATGTTAGACATCCTCATGAATTAAATGTTTACCAGGACATTTTCAAAGAGTTCTATCTAAGCAAATATAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGCCATTGTGTCTTGAAAGCTGAGTTTCCTAAAGGGAAAAAGGAGTTGGCTGTTTCCCTTTTTCAGACTGTTGTTCTGATGCTATTCAACGATGCTGAAAAGCTAAGCTTTCAAGATATCAAAGACTCTACTAGTATTGAGGACAAGGAACTGAGAAGGACTCTGCAATCCCTTGCATGTGGAAAAGTTCGTGTACTACAAAAGTTTCCAAAGAGTAGAGATGTGGAGGATAATGACTCATTTGTATTTAATGAAGGGTTCACAGCGCCTCTTTATCGTATAAAGGTGAATGCTATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACAGAAAGAGTTTTCCAAGACCGTCAATATCAGATTGATGCTGCTATTGTGAGGATAATGAAGACCAGGAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTTAAATTTCCAATAAAACCAGCTGATTTGAAGAAAAGGATTGAGAGCCTGATTGACAGAGAGTACCTGGAGAGGGACAAAAGCAATCCTCAAATATACAATTATTTGGCATAG 2412 0.4133 MSLPTKRSSTTSSSSSSSAAAAATVNNPMKKAKPHAPLHDAVFDPSSMAIDDDLKPSSNESTAPSRGLVAANLARKKSTPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPDSCDLELLYQAVSDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKHLSLSSEVEHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGNRIEDLQRIYSLFSRISALESLRQALSSYIRKTGQGIVMDEEKEKDMVSSLLDFKASLDTIWEASFFKNEAFSNTIKEAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSREINDSFKQSSQARSKLPSGIEMSVHVLTTGYWPTYPPMDVRHPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRTLQSLACGKVRVLQKFPKSRDVEDNDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKSNPQIYNYLA* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0485 803 SUPERFAMILY Cullin homology domain 444 714 IPR036317 -
Lan16g0485 803 ProSiteProfiles Cullin family profile. 447 676 IPR016158 -
Lan16g0485 803 Gene3D - 730 803 IPR036388 -
Lan16g0485 803 ProSitePatterns Cullin family signature. 776 803 IPR016157 GO:0006511|GO:0031461|GO:0031625
Lan16g0485 803 Gene3D Cullin Repeats 228 342 - -
Lan16g0485 803 SMART cul_2 477 626 IPR016158 -
Lan16g0485 803 Gene3D Cullin Repeats 344 445 - -
Lan16g0485 803 MobiDBLite consensus disorder prediction 52 66 - -
Lan16g0485 803 Pfam Cullin protein neddylation domain 735 795 IPR019559 -
Lan16g0485 803 Gene3D Cullin Repeats 446 558 - -
Lan16g0485 803 SUPERFAMILY "Winged helix" DNA-binding domain 715 803 IPR036390 -
Lan16g0485 803 MobiDBLite consensus disorder prediction 1 24 - -
Lan16g0485 803 Pfam Cullin family 107 704 IPR001373 GO:0006511|GO:0031625
Lan16g0485 803 Gene3D Cullin; Chain C, Domain 2 562 717 - -
Lan16g0485 803 PANTHER CULLIN 63 803 IPR045093 -
Lan16g0485 803 PANTHER CULLIN-4A 63 803 - -
Lan16g0485 803 SUPERFAMILY Cullin repeat-like 101 443 IPR016159 -
Lan16g0485 803 Gene3D Cullin Repeats 94 225 - -
Lan16g0485 803 MobiDBLite consensus disorder prediction 1 66 - -
Lan16g0485 803 SMART Cullin_Nedd8_2 732 797 IPR019559 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0485 Lan-Chr16 4997100 5007791 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0485 K10609 - zju:107405589 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0485 16 4997100 5007791 Lan16g0485 16 4997100 5007791 ECH
Lan16g0485 16 4997100 5007791 Lan12g1286 12 18636525 18643967 PCT
Lan16g0485 16 4997100 5007791 Lan1g1009 1 20496489 20504805 PCT
Lan16g0485 16 4997100 5007791 Lan1g0048 1 259193 267409 PCT