Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0556 ATGTCTCTGAGTGAGCGCAAGACTATTGACTTGGAACAAGGATGGGATTTTATGCAGAAGGGCATAATGAAATTGAAGAACATTCTAGAAGGGCTGCCCGAGCCTCAGTTCAGCTCTGAGGATTATATGATGTTATATACGACCATATACAATATGTGCACCCAAAAGCCTCCTCATGATTATTCCCAACAATTGTATGACAAATACAGGGAATCATTTGAAGAGTACATCATATCAACTGTATTACCCTCTTTGAGAGAGAAGCATGATGAATATATGTTGAGAGAACTTGTCAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGGTCACTCCCACCACTCAATGAAGTTGGGCTGACTTGCTTCCGTGATTTGGTTTACAAGGAATTAAATGGGAAAGTCAGAGATGCAGTAATTTCTCTTATTGATCAAGAACGTGAAGGAGAGCAGATTGATCGAGCTCTATTGAAGAATGTATTAGATATATTTGTTGAAATTGGAATGGGACAAATGGATCACTATGAGGATGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCATCAAATTGGATTCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAGGATAGGGTTGCTCATTACTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTATTGTCTGTTTATGCAAACCAACTCCTCGAAAAAGAACATTCTGGATGTCATGCATTACTTAGAGACGACAAGGTTGAAGACTTGTCGAGGATGTTTAGGCTCTTCTCTAAAATACCACGAGGCTTAGATCCTGTTTCCAGTATATTTAAACAGCATGTTACTGCTGAGGGTATGGCATTGGTAAAACTGGCTGAAGATGCAGCGAGTAACAAAAAGCCAGAGAAAAAGGATATTGTTGGTTTACAGGAGCAGGTTTTTGTTAGGAAGGTGATTGAGCTTCATGACAAGTACCTGGCATATGTTAACAACTGCTTCCAGAACCATACTCTTTTCCACAAGGCGCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTTGGTGGAAGCTCAAGTGCAGAACTGCTTGCCACATTTTGTGATAATATCCTGAAGAAAGGAGGAAGTGAAAAGCTGAGTGATGAAGCAATTGAAGAAACTCTAGAAAAGGTTGTCAAGCTGCTTGCCTATATTAGTGATAAAGATTTGTTTGCTGAATTCTATAGGAAGAAGCTTGCTCGAAGGCTTTTATTTGACAAGAGTGCCAATGATGACCATGAGAGAAGCATTTTGACAAAATTAAAGCAACAATGTGGTGGTCAATTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACATTGGCAAAGGAGAACCAAACAAGCTTTGAGGAGTATTTAAGCAATACTCCTAGCGCAGATCCTGGAATTGATTTGACAGTCACAGTACTGACCACTGGCTTCTGGCCTAGTTACAAATCCTTTGATCTCAACCTTCCAGCAGAAATGGTGAGGTGCGTTGAAGTTTTCAAGGAATTTTATCAGACAAAAACTAAGCACAGAAAACTTACATGGATATACTCCTTGGGTACCTGCAACATTAGCGGGAAATTTGAACCAAAAACTATGGAGCTGATTGTGACAACTTACCAGGCTTCTGCATTGCTTCTTTTTAATTCCTCAGATAGACTAAGTTATTCGGAGATCATGACCCAATTAAACTTATCTGATGATGATGTTATTAGACTGCTCCACTCCTTGTCATGTGCCAAGTACAAGGTTCTTACCAAGGAGCCAAACACGAAAACAATATCTTCTACTGATAATTTTGAATTCAATTCAAAGTTTACCGACAAAATGAGGAGAATCAAGATTCCTCTCCCTCCTGTGGATGAGAAGAAAAAAGTAATTGAAGATGTTGACAAGGACAGAAGATATGCTATTGATGCTTCAATTGTGCGCATTATGAAGAGTCGGAAAGTTTTGTCTTACCAGCAGTTGGTTGTGGAGTGTGTTGAACAATTAGGCCGTATGTTTAAGCCTGATGTCAAGGCCATTAAGAAGCGGATTGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGAGAAAGATAATGCAAATATGTTCAGGTACTTGGCATGA 2235 0.3955 MSLSERKTIDLEQGWDFMQKGIMKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYIISTVLPSLREKHDEYMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYEDDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGMALVKLAEDAASNKKPEKKDIVGLQEQVFVRKVIELHDKYLAYVNNCFQNHTLFHKALKEAFEIFCNKGVGGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNTPSADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKVLTKEPNTKTISSTDNFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSYQQLVVECVEQLGRMFKPDVKAIKKRIEDLISRDYLEREKDNANMFRYLA* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0556 744 Gene3D - 661 744 IPR036388 -
Lan19g0556 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Lan19g0556 744 Gene3D Cullin Repeats 389 502 - -
Lan19g0556 744 Gene3D Cullin Repeats 142 264 - -
Lan19g0556 744 Pfam Cullin family 26 647 IPR001373 GO:0006511|GO:0031625
Lan19g0556 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Lan19g0556 744 PANTHER CULLIN 3B 2 743 - -
Lan19g0556 744 SMART cul_2 420 569 IPR016158 -
Lan19g0556 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Lan19g0556 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Lan19g0556 744 Gene3D Cullin Repeats 267 388 - -
Lan19g0556 744 Gene3D Cullin Repeats 4 141 - -
Lan19g0556 744 PANTHER CULLIN 2 743 IPR045093 -
Lan19g0556 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Lan19g0556 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Lan19g0556 744 Coils Coil 743 744 - -
Lan19g0556 744 SUPERFAMILY "Winged helix" DNA-binding domain 658 744 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0556 Lan-Chr19 9169484 9180065 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0556 K03347 - gmx:100784626 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1286 12 18636525 18643967 Lan19g0556 19 9169484 9180065 PCT
Lan1g1009 1 20496489 20504805 Lan19g0556 19 9169484 9180065 PCT
Lan1g0048 1 259193 267409 Lan19g0556 19 9169484 9180065 PCT
Lan19g0556 19 9169484 9180065 Lan12g1286 12 18636525 18643967 PCT
Lan19g0556 19 9169484 9180065 Lan1g1009 1 20496489 20504805 PCT
Lan19g0556 19 9169484 9180065 Lan1g0048 1 259193 267409 PCT