LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan15g0123	ATGCCGCCATCTGTGGTGGATCCTTTGTTGCTTCCACCGTCACTTCCACCGTTGAGCTCTGACATTGTTCCCCGCAGTTCCAAGGATCAGCGATTCGGTGATCTAAGAGGGTTGAAATGGAGAATAAATCTTGGGGTCTTGCCATCTTCATCTTCAATTGATTATCTTCGTAGGGCTACAGCTGATTCTAGAAGGAGGTATGCCAGTTTAAGAAGGCAACTCCTGGCTGAACCGCATATAGCAAAGGATGGAAGTAGTTCAGACGATGTTGTCATGGACAACCCCCTTTCACAAAATCCAGATAGTTCATGGAGTCGCTTTTTTCACAGTGTAGAGCTAGAGAGAATTGTTGTTCAGGATTTATCACGTTTATACCCAGAGCATGGCAGTTATTTCCAGACACCGGGATGCCAAGGCATGTTGAGACGAATTTTATTACTTTGGAGTCTCAAGCACCCAGAATGTGGTTATAGGCAAGGAATGCACGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATCTGGAGTGTCTTTCCGAAGTTCGAAAGCATTATGAAGATCTCTTCACCGACAGATTTGATGAACTTTTATGTCAAGAGAATGATCTTTGCTACAGCTTTGAATTTCGAAAATCTCAAGACTCGTTGGACGATGAAACTGACTCCCATGGAAAGGCAATGAAAGTCAATAGTCTTGATGAGCTTGATCCTGAGATACAGACCTTTGTATTGCTAAGTGATTCTTATGGCGCGGAAGGTGAACTGGGTATTGTTTTATCAGAGAAATTTATGGAACATGATGCTTACTGTATGTTTGATGCTTTAATGACCCACGGTTCAGTTGCAACGGCCAATTTCTTCTCTTCCTCTCCTGCAGCAGCATCCCTTAGTGGCCTCTCTCCGGTGATTGAAGCTTCTACTGCATTATATCATTTGTTGTCTCTCGTGGATTCATCTCTACATAACCATCTTTTGGATCTTGGGGTTGAACCTCAGTACTTCTCTCTCCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTCGACAACCTCTTGATCATCTGGGATGAGATCTTTGCATCAGATAATAATAGTAAAGTGGAAAAAAATGCCGATGACGACATAGAGTGGGGGTTCCGAATCTTACGTTCACCTCGTGGAGCATTTATCTCAGCTATTGCTGTAGCAATGTTACTTCATTTAAGATCTTCACTCCTTGCAACTGAAAATACTACAACCTGTCTCCAGAGACTATTAAACTTCCCTGAAAGCATTAATCTTGAAAAACTACTAGAAAAGGCTAAATCCTTGCAGGCTCTTGCATTAAGTGTTGATATTTCATCGTCTTCACCACTGTTTCTAGGGTTTCATCACCGAAGTAAATCAATGCTTTCAAGATCTGTGACCCTTCAATCTGAATCTGCATCTCCAACAATGCCTCTGACTTCGTTACCTGATAGCTATTGGGAAGATAAGTGGAGAGTTGCCCACAGTACTGAAGAAAGTAAGCAAGAGGTACAAATATCGGTTCCAACTCGGAAAAAGGGATGGACAGAAAAGGTCAAGATCAGTTTGAGAAGAACAGAATCTGATCCACCTCCATCGAGGATTCAGAGTGGCAAAAGGTTACCTAAGGCATCTGTTAGGCGCAGTTTGTTAGAAGATCTTCGTAATACCCTTGGCTTGGAGGAAGATGCAGAACAAACAAATTGTCGCGAAATCCTGTGCCTGCAGGATAATCTTTCTGAAGTAGTTGAAGAGGAGCAACAAGATGGTGACTGTAAAGGCGACAGCAATTACTCGTCTGATGATAGATCTCCAAGTGGAAGTACAGGCAGTGAGGACAACTCTTCTGTATTCTCTGAATGCAATGAAACTTCACAAACCAGCCTCAGTGATCCACGTGTGCCAACCTCTGTTCCTCCTGAAAACATACCTGAGACATCAGGGTCCAATGACAACGATGAAGGAAATTCAGCCTCGGATCCTAAGGAAAGAAAACAGAATAAAATCCAGTGGTTATTGAAGTTCGGACGGAATACTGTTGACTATATCTTCGATAAAGTAGGCGGTGCTGCGAAGGCTGCAAAATCAGCCAACAGCTCTAGTAACCAAAATAATACTCCATCACCGACATCTTCTACCGCAAATGCGGATGATAGTTTTGTTAGCTGCAATGGAGATTCTGTAGACCAGGATATGAAGGGTAGTTTGAAGAATATTGGACAGTCTATGCATGACCAAATTCAGGTAATTGAATCTATTTTTCAACAAGACCAAGGCCAAAGAGCCTTAATAGAGAATTTATCTAAAAATGTTGTTGTTGGTAAAGGCCATGCCATATCAGCTCTGAAGGAGCTTCAGAAAATTAGCAATATTTTATCTGAGATGTGA	2400	0.4213	MPPSVVDPLLLPPSLPPLSSDIVPRSSKDQRFGDLRGLKWRINLGVLPSSSSIDYLRRATADSRRRYASLRRQLLAEPHIAKDGSSSDDVVMDNPLSQNPDSSWSRFFHSVELERIVVQDLSRLYPEHGSYFQTPGCQGMLRRILLLWSLKHPECGYRQGMHELLAPLLYVLQVDLECLSEVRKHYEDLFTDRFDELLCQENDLCYSFEFRKSQDSLDDETDSHGKAMKVNSLDELDPEIQTFVLLSDSYGAEGELGIVLSEKFMEHDAYCMFDALMTHGSVATANFFSSSPAAASLSGLSPVIEASTALYHLLSLVDSSLHNHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNNSKVEKNADDDIEWGFRILRSPRGAFISAIAVAMLLHLRSSLLATENTTTCLQRLLNFPESINLEKLLEKAKSLQALALSVDISSSSPLFLGFHHRSKSMLSRSVTLQSESASPTMPLTSLPDSYWEDKWRVAHSTEESKQEVQISVPTRKKGWTEKVKISLRRTESDPPPSRIQSGKRLPKASVRRSLLEDLRNTLGLEEDAEQTNCREILCLQDNLSEVVEEEQQDGDCKGDSNYSSDDRSPSGSTGSEDNSSVFSECNETSQTSLSDPRVPTSVPPENIPETSGSNDNDEGNSASDPKERKQNKIQWLLKFGRNTVDYIFDKVGGAAKAAKSANSSSNQNNTPSPTSSTANADDSFVSCNGDSVDQDMKGSLKNIGQSMHDQIQVIESIFQQDQGQRALIENLSKNVVVGKGHAISALKELQKISNILSEM*	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan15g0123	799	PANTHER	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	29	740	-	-
	Lan15g0123	799	MobiDBLite	consensus disorder prediction	525	548	-	-
	Lan15g0123	799	Gene3D	putative rabgap domain of human tbc1 domain family member 14 like domains	98	284	-	-
	Lan15g0123	799	SMART	tbc_4	27	411	IPR000195	-
	Lan15g0123	799	PANTHER	YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN	29	740	-	-
	Lan15g0123	799	MobiDBLite	consensus disorder prediction	589	669	-	-
	Lan15g0123	799	Gene3D	-	303	446	-	-
	Lan15g0123	799	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	34	324	IPR035969	-
	Lan15g0123	799	MobiDBLite	consensus disorder prediction	698	722	-	-
	Lan15g0123	799	MobiDBLite	consensus disorder prediction	603	659	-	-
	Lan15g0123	799	Pfam	Rab-GTPase-TBC domain	264	364	IPR000195	-
	Lan15g0123	799	Pfam	Rab-GTPase-TBC domain	114	200	IPR000195	-
	Lan15g0123	799	SUPERFAMILY	Ypt/Rab-GAP domain of gyp1p	302	440	IPR035969	-
	Lan15g0123	799	ProSiteProfiles	TBC/rab GAP domain profile.	30	364	IPR000195	-
	Lan15g0123	799	Coils	Coil	786	799	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan15g0123	Lan-Chr15	883676	888963	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan15g0123	K18469		-	gmx:100816501	949.118

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan15g0123	15	883676	888963	Lan14g0149	14	1843236	1848472	LSH
	Lan12g1024	12	16908215	16913223	Lan15g0123	15	883676	888963	PCT
	Lan1g1249	1	22346011	22350307	Lan15g0123	15	883676	888963	PCT
	Lan15g0123	15	883676	888963	Lan12g1024	12	16908215	16913223	PCT
	Lan15g0123	15	883676	888963	Lan1g1249	1	22346011	22350307	PCT