Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1024 ATGCCGCCGGCTCTAATTGATCCTTCGTTGCCGAAATCATCGTCGGTGTCGCTGGTGAGCTCCGACAATGTTTCAGATAGATTGAGTGATCAATTCGAAGATCTTAGAAGTTTGCAGTGGCGTATAAATCTAGGGGTTTTGCCTTCTTCGCTTTCAACTTCCATTGATGATCTTCGTCGTACCACCGCTGATTCTAGAAGGAGGTATGCCAGTTTGAGAGGACGCCTCCTGGTTGATCCACATATTTCAAAGGATGGAAGTAGATCACCCTCACCCAATCTTATCATGGACAACCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTATTTTCGCAATGCAGAGCTGGAGAGGATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAGCTATTTCCAGACACCAGGATGCCAAGGCACTTTGAGACGAATTTTATTATTATGGTGTCTGAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAGTTACTTGCACCACTTCTTTATGTTTTGCAAGTGGATGTCGAGAGTCATTCAGATGTTCGAAAACTTTATGAAGACCACTTCACTGACAGATTTGATGGCCTTTTTTGTCAAGAGAATGATCTTTCCTACAACTTCGATTTTAGAAAATCTCCAGACTTGATGGATGATGAAATTGACTCAAATGGAAATGCAATGAAAATCAAGACTCTTGATGAGCTTGATCCTAAGATAAGGACCATTGTATTGCTAAGTGATGCTTATGGGGCTGAAGGTGAACTTGGTGTTGTTTTATCTGAGAAGTTCACGGAGCATGATGCTTACTGTATGTTTGATGCTTTAATGAACGGGTCTTGTGGTTCAGTTGCAATGGTCGATTTCTTCTCCTATTCTCCTCTAGCTGGGTCCTATAGTGGCTTGCCTCCTGTAATTGAAGCTTCAACTGCATTGTATTATTTGTTGTCTTGTGTGGATTCATCACTGCATAGCCATCTTGTTGATCTTGGTGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTTGCCAACCTCTTGATCATCTGGGACGAGATCTTTTTGTCAGATAATGATAAAGTGGTAAAGCATGCTGAGGACAACACCGACTCTGGTTTTAATATCTTTCAGTCATCTCGTGGAGCATTTATCTCTGCTATGGCTGTAGCAATGTTACTTCATTTAAGATCTTCACTACTTGCCACTGAAAATCCTACGACCTGTCTCCAGAGATTACTAAGCTTCCCTGAGAAGACTAATATTAAGAAACTACTAGAGAAGGCAAAATCCTTGCAAGCTCTTGCATTAAGTTCTGATATTTCATCCTCAACACCTCCATTTGTAGGAGGTCACAACCAAGGTAAATCAATTATTACAAGATCTCGGACCCTTCCGTCTGAATCAGATTCTCCAAAAACTCCTCTGAATTTGTTTCCTGATAGCTATTGGGAAGAACAGTGGAGAGTTGTACACAAGGCTGAAGAACTTAAGAAAGATGAATTAGAAAAACAGGTTCCAACTCGTAAAAAGGGATGGACAGAAAAGGTAAAGTTGAGTTTGAAAAGAGCAGAATCCCATCCATTTTCATCAACAATTAAGAGTGGTAAAAAGGAATCTGAGGTAAAGGTTAGGCACAATTTGTTAGAAGACCTTTCTAAGGAACTAGGCTTTGAGGAAGATACTGAAAAACTGCACTGTCATGAATTTGCATGCCAGCGGGATAATCTTTCTGTGGCTGGTGAAGTGGAGCAAGAAAGTGATGGCTCTGAAGGCTGCAACAGTTATTCTGCCGATGATAGATGTCTAAGTGGAAGCATTGGCAGTGAAGAAAACTTGTCTATAACCTCTGGCCTTGCTAGTCCTCCTAATGAGGCCAATGATCATGAAAATTACTTGGAGAAAAGTAGTGTTGGGTCTAACTTATTTCTTGATGAAATTAATGAAATTACAAATATTAGTCCTGTAGATTCACCTCTTCCAATCTCTGATCCTCCTGAGTGCATATCAGAGACATCAGGGTGCAAAAATGTTTCCATGGGAAATTTGGCTACAAATGCTAAGGAGAGAAAAGTGAATAAATTTCAGTGGCTTTGGAAGTTTGGGCGGAATAATGGCCAAGTTATATCTGAGAAAGGAGAAGTTCCTGAGGCTGTAAAACCTACTAAGAATTATATTGATCATTGTACAACACCCTCTTCTACAGCCGACATGGGGACTTTGAGGAATATTGGTCAGTCGATGCTTAAGCATATTCAGGTGATCGAGTCTTCTATCCAACTAGAGCAAGGCCAGGGAACCTTACCGGAAAACTTGTCTAAATATGTTCTGGTTACTACAGGGCAAGTTACTGCCATGACAGCTCTAAAGGAGCTTCGAAATATTAGCAATCTTCTATCTGAGATGTGA 2445 0.4106 MPPALIDPSLPKSSSVSLVSSDNVSDRLSDQFEDLRSLQWRINLGVLPSSLSTSIDDLRRTTADSRRRYASLRGRLLVDPHISKDGSRSPSPNLIMDNPLSQNPDSTWSRYFRNAELERMVDQDLSRLYPEHGSYFQTPGCQGTLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDVESHSDVRKLYEDHFTDRFDGLFCQENDLSYNFDFRKSPDLMDDEIDSNGNAMKIKTLDELDPKIRTIVLLSDAYGAEGELGVVLSEKFTEHDAYCMFDALMNGSCGSVAMVDFFSYSPLAGSYSGLPPVIEASTALYYLLSCVDSSLHSHLVDLGVEPQYFALRWLRVLFGREFSLANLLIIWDEIFLSDNDKVVKHAEDNTDSGFNIFQSSRGAFISAMAVAMLLHLRSSLLATENPTTCLQRLLSFPEKTNIKKLLEKAKSLQALALSSDISSSTPPFVGGHNQGKSIITRSRTLPSESDSPKTPLNLFPDSYWEEQWRVVHKAEELKKDELEKQVPTRKKGWTEKVKLSLKRAESHPFSSTIKSGKKESEVKVRHNLLEDLSKELGFEEDTEKLHCHEFACQRDNLSVAGEVEQESDGSEGCNSYSADDRCLSGSIGSEENLSITSGLASPPNEANDHENYLEKSSVGSNLFLDEINEITNISPVDSPLPISDPPECISETSGCKNVSMGNLATNAKERKVNKFQWLWKFGRNNGQVISEKGEVPEAVKPTKNYIDHCTTPSSTADMGTLRNIGQSMLKHIQVIESSIQLEQGQGTLPENLSKYVLVTTGQVTAMTALKELRNISNLLSEM* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1024 814 Pfam Rab-GTPase-TBC domain 117 180 IPR000195 -
Lan12g1024 814 Pfam Rab-GTPase-TBC domain 268 371 IPR000195 -
Lan12g1024 814 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 101 287 - -
Lan12g1024 814 MobiDBLite consensus disorder prediction 86 101 - -
Lan12g1024 814 MobiDBLite consensus disorder prediction 81 101 - -
Lan12g1024 814 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 34 330 IPR035969 -
Lan12g1024 814 Gene3D - 309 452 - -
Lan12g1024 814 ProSiteProfiles TBC/rab GAP domain profile. 30 370 IPR000195 -
Lan12g1024 814 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 306 445 IPR035969 -
Lan12g1024 814 SMART tbc_4 27 416 IPR000195 -
Lan12g1024 814 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 29 775 - -
Lan12g1024 814 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 29 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1024 Lan-Chr12 16908215 16913223 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1024 K18469 - gmx:100816501 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1024 12 16908215 16913223 Lan1g1249 1 22346011 22350307 LSH
Lan12g1024 12 16908215 16913223 Lan15g0123 15 883676 888963 PCT
Lan12g1024 12 16908215 16913223 Lan14g0149 14 1843236 1848472 PCT
Lan15g0123 15 883676 888963 Lan12g1024 12 16908215 16913223 PCT
Lan14g0149 14 1843236 1848472 Lan12g1024 12 16908215 16913223 PCT