Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0104 ATGGAAAACTCAGATGAACAAAACCAACTTCCATTCCCTCCAAACCCTAACAATGCAACCAACACCGAAACCAAAGAAGAAGAAGAAGAAAACGACGACGTTGAAGAAGAAGAAGAAGAAGACATAGACGACGATGACGACGACGTCGTTTCAAACTCTCCACTCTCAAAGTTACGCCAACAGCGTTTCAACCTCGAAACGCTTTCACGGCGATTATCATCAGAACTCGTTCCAATCCGAGTCCACGATGTTTTGATTAACGGAAACACCAAAACCAAGGATTGGATCATCGAAGCTGAACTCAAAGGAATCGAAAACGTAACCACTGTTCAGGAATTGCTTCACGCTTCTGAAATCGCACTCGCCAGGCTTCAGAGTCTCGGAATTTTTGAATCCACTAAGGTTCGACTCGAGCCTGGACCGCCGGAGTTGCCGAACACTACTAATGTCATTGTCGATGTTGTCGAGGCTTTGAACAGTGTCTCTGGTGAATTCGGCGTTTTCACGAAACCCGGGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAACTTTTTAGGTTATGGTGATCTATGGGATGCTTCTGTAGCCTATGGTGCCAACCAAGCGACAGAGTTGAGTGTAGGGGTGTATGCCCCTCGACTTAAGGGATCTTTAACTCCTCTTGTGGCAAGACTATCCATGCTTTCCCAAGACTGGCAAGAGTTTTCTTCATACAAAGAGCGAATGTTGGGCTTGTCTCTTGGCTTAATCTCAACAAAGCACCATGACTTAGCTTACACTCTTGGATGGCGTACCTTAACAGATCCATCACAAATGTCATCTATGTCTATTAGGAGGCAGCTTGGGCATGGTTTGCTGTCGTCTTTGAAGTATACATATAAAGTTGACAGGAGAAACTCACCAATTAGGCCTACAAAAGGATACGCTTTTCTTTCTACCACTCAATTTGGCGGCCTTACACCAGATCACCGGAGCTTGCGGTTTCTGCGGCAGGAGTTTGATATTCGCTATGCTGTCCCATTTGGGTTTTTTAATACAGCACTGAACCTTGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGGCATGGTTTTATGGACAAAACATCTCCCCTTCCCGAAAGGTTTTATTTAGGTGGCGATTTCTCTCCAGTTTGCACCCTAGGAGGACCGATGACATTGTGGGGATTTAAAACTAGGGGATTAGGTCCTACTGAACCACGAAGGCAAAGCAGAGATGGAACTTTAGATGAGCAAGATGATTCCTCTAGACGGGACTATGTTGGAGGAGATCTTGCTGTGACTGCTTTTGCCGACCTCTCTTTTGATCTTCCAATTAGGTGGTTGAGAGAACATGGAATCCATGGGCATGTTTTTGCTGGCGCTGGAAATACTGCTAAATTAACTCAGAATGAATACAAGCACTTCTCTCCTCGGAAGTTCTTAGATTCCTTTCGAACATCAGTGGGATGTGGATTTGTTATTCCTACTAGACTTCTCCGCCTTGAGGGTAACTTCTACTACATACTCAAGCAAGATGAACATGATCGTGGGAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCGTAG 1599 0.4497 MENSDEQNQLPFPPNPNNATNTETKEEEEENDDVEEEEEEDIDDDDDDVVSNSPLSKLRQQRFNLETLSRRLSSELVPIRVHDVLINGNTKTKDWIIEAELKGIENVTTVQELLHASEIALARLQSLGIFESTKVRLEPGPPELPNTTNVIVDVVEALNSVSGEFGVFTKPGTSSWTAEGTLKYKNFLGYGDLWDASVAYGANQATELSVGVYAPRLKGSLTPLVARLSMLSQDWQEFSSYKERMLGLSLGLISTKHHDLAYTLGWRTLTDPSQMSSMSIRRQLGHGLLSSLKYTYKVDRRNSPIRPTKGYAFLSTTQFGGLTPDHRSLRFLRQEFDIRYAVPFGFFNTALNLGISAGAVFPWGHGFMDKTSPLPERFYLGGDFSPVCTLGGPMTLWGFKTRGLGPTEPRRQSRDGTLDEQDDSSRRDYVGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGAGNTAKLTQNEYKHFSPRKFLDSFRTSVGCGFVIPTRLLRLEGNFYYILKQDEHDRGKTGFRFSFSAPS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0104 532 Gene3D membrane protein fhac 78 157 - -
Lan15g0104 532 MobiDBLite consensus disorder prediction 25 49 - -
Lan15g0104 532 PANTHER OUTER MEMBRANE OMP85 FAMILY PROTEIN 14 530 - -
Lan15g0104 532 Pfam Surface antigen variable number repeat 79 156 IPR010827 GO:0019867
Lan15g0104 532 MobiDBLite consensus disorder prediction 407 426 - -
Lan15g0104 532 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 14 530 IPR039910 -
Lan15g0104 532 MobiDBLite consensus disorder prediction 1 21 - -
Lan15g0104 532 MobiDBLite consensus disorder prediction 401 426 - -
Lan15g0104 532 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 171 530 - -
Lan15g0104 532 MobiDBLite consensus disorder prediction 1 55 - -
Lan15g0104 532 Pfam Omp85 superfamily domain 186 529 IPR000184 GO:0019867
Lan15g0104 532 Coils Coil 17 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0104 Lan-Chr15 723598 728505 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0104 K07277 - gmx:100785408 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0104 15 723598 728505 Lan14g0162 14 2034312 2039729 LSH
Lan15g0104 15 723598 728505 Lan3g0972 3 21419651 21424114 LSH
Lan15g0104 15 723598 728505 Lan2g1153 2 22790086 22794567 PCT
Lan2g1153 2 22790086 22794567 Lan15g0104 15 723598 728505 PCT