Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0285 ATGGTTGTTATGGTTATGGGCTTCAAACTCATAAAAATGTGGAATGTGAGAGTGGTGTTGTTGCTGCTAGCATCTTCACTTCTTGGTTTTGCTACAGCTTCTGTGTCCTATGACTCTAAAGCTATCACAATTAATGGCCAAAGAAGGATCCTCATTTCTGGATCCATTCATTATCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAAGGAGGCTTGGATGTGATTCAAACTTATGTATTCTGGAATGGGCATGAACCTGAACCTGGCAAATATTATTTTGAGGGGAACTATGATCTAGTGAAGTTCATAAAGTTGGTACAACAAGCAGGGCTTTATGTTAATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAATTTTGGGGGTTTCCCTGTTTGGCTGAAGTATATTCCAGGTATCAGCTTCAGAACAGACAATGGCCCTTTTAAGTTTCAAATGCAAAAATTTACTGAGAAGATTGTCAACATAATGAAAGCAGAAAGGTTATATGAGTCTCAAGGAGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAGATCGGCGCTCCGGGTCAATCCTACACTAAGTGGGCCGCAAATATGGCTCAAGGACTTGGTACTGGGGTTCCATGGATAATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAATACTTGCAACGGTTTCTATTGTGATTATTTCTCTCCAAATTCAGCTAACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTCACGGAGTTTGGAGGTCCAGTTCCTTATCGACCGGCTGAAGACTTAGCATTCTCGGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGTATCACGGGGGAACAAATTTTGGTCGCACTGCTGGTGGGCCCTTTATTGCTACAAGCTATGATTATGATGCACCTCTGGATGAATATGGACTACTCAGACAGCCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAGTAAAACTCTGTGAACCTGCTTTAATATCTGCAGATCCTATTGTAACACAGATTGGAAACTATCAAGAGGCTCATGTCTTTAAATCAAAGTCGGGAGCTTGTGCTGCATTCCTTGCAAACTACAACCCAAAATCCTATGCAAAGGTAGCATTTGGAAATATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAATCACACCGTTTACAACACTGCACGGATTGGTTCTCAGAGTGCACAGATGAAGATGACTCGTGTACCTATTCACGGCGGACTCTCTTGGGAAGAATTCAGTGAAGAAACAGCTTCTACTGATGATAGTACCTTCACCATGGTTGGCCTGTTGGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCCACCGATGTCGTGATTGATCCCAATGAAGGATTTTTGTGGAAAGGAAACAATCCTGTTCTTACAGTATTATCTGCTGGGCATGCCTTGCATGTTTTTGTCAATGGCCAGCTATCAGGAACTATATACGGAAGCTTAGAATTCCCTAAACTAACATTTAGCGAGGGTGTAAAGCTCAGAGCTGGTGTTAACAAAATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTTGGTCCAATTACATTAAATGGCCTCAACGAGGGGAGAAGGGACTTGACTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACGTTGAGTCTTCATTCTCTCAGTGGAAGTTCCACAGTGGAGTGGATTCAAGGGTCTTTAATTTCTCAAAAGCAGCCATTGACTTGGTACAAAACTACTTTTGATGCCCCGGCTGGAGTTGCACCATTTGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGCTAAATGGACAGAGTCTCGGCCGCTACTGGCCTGCTTATAAAGCATCTGGTACATGTGATTATTGCAGCTATGCTGGAACTTATACCGAGACTAAATGCAGAAGTAACTGTGGGGAGTCTTCACAAAAATGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGAAATTTATTGGTTGTGTTTGAAGAATTAGGTGGAGATCCCAATGGGATCTTTTTGGTTAGAAGGGATATCGATAGTGTGTGCGCTGATATCTATGAGTGGCAACCAAATCTTATAAGTTATCATATGCAAGTTTCCGGCAAAGTTAGCAAACCTGTTAGACCGAAAGCACATTTATCATGTGGCCCTGGACAGAAAATTTCGTCAATCAAATTTGCTAGCTTTGGTACTCCATTAGGGTCTTGTGGAAACTTCCTTCAAGGAGGTTGTCATGCTCACAAGTCATATGATGCCTTTGAAAGGAATTGTGTTGGACAGAACTGGTGTACAGTAACTTTATCACCTGAAAATTTTGGAGGGGATCCATGTCCAAATGTCATGAAGAAACTAGCAGTGGAAGCTGTTTGCACCTGA 2547 0.4244 MVVMVMGFKLIKMWNVRVVLLLLASSLLGFATASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPEPGKYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTEKIVNIMKAERLYESQGGPIILSQIENEYGPMEYEIGAPGQSYTKWAANMAQGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNSANKPKMWTEAWTGWFTEFGGPVPYRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAVKLCEPALISADPIVTQIGNYQEAHVFKSKSGACAAFLANYNPKSYAKVAFGNMHYNLPPWSISILPDCNHTVYNTARIGSQSAQMKMTRVPIHGGLSWEEFSEETASTDDSTFTMVGLLEQLNTTRDLSDYLWYSTDVVIDPNEGFLWKGNNPVLTVLSAGHALHVFVNGQLSGTIYGSLEFPKLTFSEGVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGETLSLHSLSGSSTVEWIQGSLISQKQPLTWYKTTFDAPAGVAPFALDMGSMGKGQVWLNGQSLGRYWPAYKASGTCDYCSYAGTYTETKCRSNCGESSQKWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYHMQVSGKVSKPVRPKAHLSCGPGQKISSIKFASFGTPLGSCGNFLQGGCHAHKSYDAFERNCVGQNWCTVTLSPENFGGDPCPNVMKKLAVEAVCT* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0285 848 Pfam Beta-sandwich domain in beta galactosidase 354 425 IPR041392 -
Lan10g0285 848 SUPERFAMILY Galactose-binding domain-like 409 580 IPR008979 -
Lan10g0285 848 Pfam Glycosyl hydrolases family 35 42 346 IPR031330 -
Lan10g0285 848 PANTHER BETA-GALACTOSIDASE 14 842 - -
Lan10g0285 848 Gene3D Glycosidases 29 350 - -
Lan10g0285 848 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 180 192 IPR019801 GO:0004553|GO:0005975
Lan10g0285 848 ProSiteProfiles SUEL-type lectin domain profile. 762 848 IPR000922 GO:0030246
Lan10g0285 848 Gene3D - 601 739 - -
Lan10g0285 848 SUPERFAMILY Galactose-binding domain-like 589 754 IPR008979 -
Lan10g0285 848 Gene3D - 762 848 IPR043159 -
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 45 62 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 66 84 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 121 140 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 178 193 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 257 272 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 294 309 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 314 330 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 625 639 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PRINTS Glycosyl hydrolase family 35 signature 652 668 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 PANTHER BETA-GALACTOSIDASE RELATED 14 842 IPR001944 GO:0004553|GO:0005975
Lan10g0285 848 Pfam Galactose binding lectin domain 770 847 IPR000922 GO:0030246
Lan10g0285 848 Gene3D - 447 592 - -
Lan10g0285 848 SUPERFAMILY (Trans)glycosidases 35 351 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0285 Lan-Chr10 1858127 1864297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0285 6 848 Glycoside Hydrolase AT3G13750 79.339 0.0 1433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0285 - - gmx:100811187 1592.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2135 6 31829004 31837441 Lan10g0285 10 1858127 1864297 LSH
Lan10g0285 10 1858127 1864297 Lan5g0619 5 12683204 12691300 PCT
Lan10g0285 10 1858127 1864297 Lan2g0405 2 4154253 4159843 PCT
Lan5g0619 5 12683204 12691300 Lan10g0285 10 1858127 1864297 PCT
Lan2g0405 2 4154253 4159843 Lan10g0285 10 1858127 1864297 PCT