Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g1547 ATGGTGGGTATTCCTAATGACATGCTTTATACACTGTCTAATAGTGTTCAAGCAGCTGAAAAATGGGTTTCTAAGAATATTTCATCACATGTCTCATCTGGAGGAGTAGATATCAGGTACATTGCTGTGGGAAACGAATCTTTCTTGTCAACTTACAATTGTACCTTTGAATCTACAACTCTTCCAGCTCTTCAAAATATCCAATCAGCTCTTATAAAATCTGGTCTTGGCAATCAGGTTAAAGTCACTGTCCCTATGAATGCCGATGTCTATCTGAGCGCATCAGATAAACCTTCCGATGGTGACTTCAGGCCCGACATCCACGATCTCATGCTGCAGATTGTCAAGTTCTTGAGCCAGAACAACGCTCCATTTATCGTGAACATCTATCCTTTTATCAGCCTCTACTCGGACGCCAATTTTCCTGTTGACTTTGCCTTTTTCAATGGCTTCCAGACTCCTATAAATGATAATGGAAGGATCTATGACAATGTCTTAGATGCAAACCATGACACTCTAGTATGGGCACTGCAGAAGAATGGCTTCGGAAACTTACCTATAATTGTTGGAGAAATAGGGCTTCATGTCATGTTTCCTTGCCGTTCGATAAGGCCTGGTCCTATAGATGCATACTTGTTTAGCCTCATAGATGAAGATAGCAAAAGCATTCAGCCGGGTAATTTCGAACGACATTGGGGGATCTTTTACTACGATGGAAAGCCGAAGTATCTGCTTAACCTCGGAACAAGAACCAATGGTTTAGTAGGTGCTAGTGGTGTAGCATATCTGCCTAAAAAATGGTGTGTTCTGAAACCCTCAGCAAACCTGAATAGTGATCAAGTGGCACCAAGTGTATCTTATGCTTGTCAAAGTGCAGATTGCACTAGTCTTGGTTATGGAACTTCATGCCGAGGCTTAGATATTCGCGGTAATCTCTCTTATGCATTCTATAGCTACTACCAGGTGAATGATCAGATTGACAGTGCATGCAAATTCCCTGGCCTTTCTGTTGTAACTGATAATGATCCTTCAACTCCAAATTGCAAATTCATAATCATGATCCAGACAGATTCTGCTTACTATTTTCGGAATTGGAGGACAATTTGGTCCCTTCCAATAATGATCTTTGTATTTCTGTTTCCTAATATTATGTAA 1155 0.4069 MVGIPNDMLYTLSNSVQAAEKWVSKNISSHVSSGGVDIRYIAVGNESFLSTYNCTFESTTLPALQNIQSALIKSGLGNQVKVTVPMNADVYLSASDKPSDGDFRPDIHDLMLQIVKFLSQNNAPFIVNIYPFISLYSDANFPVDFAFFNGFQTPINDNGRIYDNVLDANHDTLVWALQKNGFGNLPIIVGEIGLHVMFPCRSIRPGPIDAYLFSLIDEDSKSIQPGNFERHWGIFYYDGKPKYLLNLGTRTNGLVGASGVAYLPKKWCVLKPSANLNSDQVAPSVSYACQSADCTSLGYGTSCRGLDIRGNLSYAFYSYYQVNDQIDSACKFPGLSVVTDNDPSTPNCKFIIMIQTDSAYYFRNWRTIWSLPIMIFVFLFPNIM 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g1547 384 Pfam X8 domain 266 335 IPR012946 -
Lal8g1547 384 Pfam Glycosyl hydrolases family 17 2 193 IPR000490 GO:0004553|GO:0005975
Lal8g1547 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 193 IPR044965 GO:0004553|GO:0005975
Lal8g1547 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 203 360 IPR044965 GO:0004553|GO:0005975
Lal8g1547 384 SUPERFAMILY (Trans)glycosidases 1 243 IPR017853 -
Lal8g1547 384 Gene3D Glycosidases 197 247 - -
Lal8g1547 384 SMART X8_cls 266 350 IPR012946 -
Lal8g1547 384 Gene3D Glycosidases 1 194 - -
Lal8g1547 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 203 360 - -
Lal8g1547 384 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 1 193 - -
Lal8g1547 384 Gene3D - 263 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g1547 Lal-Chr8 19809245 19811691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g1547 1 359 Glycoside Hydrolase AT4G31140 67.016 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g1547 K19893 - gmx:100790297 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1547 8 19809245 19811691 Lal25g1081 25 14126219 14129430 LSH
Lal8g1547 8 19809245 19811691 Lal4g0600 4 4362342 4364008 PCT
Lal4g0245 4 1583004 1586546 Lal8g1547 8 19809245 19811691 PCT