Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0245 ATGGGGTTGTTGGTAGATGAAAAGTTGAGTAAGTCTCTTGTTTTTTTGTTACTTAATGTATTGTTAGTGGGTTCAGTGAGTGGAATTGGTGTTAACTGGGGTACACAGGCCACACACCCTTTGTCACCATCAAAAGTGGTGAAATTGATGAAAGATAATGGTATTCAGAAGGTTAAGCTTTTTGATGCTGATCCTGGAATCTTAAGTGCTCTCAAGAAATCTGGGCTCCAGGTAATGGTGGGTATTCCAAATGACATGCTTTTTACACTTGCTAATAGCTTGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCACATGTCTCTTCTGGTGGTGTAGACATAAGGTATGTTGCAGTGGGGAATGAACCATTTTTGTCAACATACAATGGTACCTTTGAATCCACAACTCTTCCAGCTCTTCAAAATATCCAAGCAGCTCTCACAAAATCTGGTTTGAGCAACAAGGTTAAAGTGACTGTCCCTTTGAATGCCGATGTATATCAGAGTTCATCACAGAAGCCTTCGGACGGCGACTTCAGGACAGACATCCATGATCTCATGCTACAAATTGTCAAGTTCTTGAATGACAATGGAGCTCCATTCACTGTGAACATATATCCTTTTTTAAGTCTATATGAAGATGCCAATTTTCCGGTTGATTACGCTTTTTTTAATGGATTTCAGCCTGCTATAGATGACAATGGAAAAGCCTATGATAATGTTTTTGATGCTAACCATGATACTCTAGTATGGGCACTACAGAAGAACGGTTTCGGAAACTTGCCCATAATTGTAGGAGAAATTGGTTGGCCTACAGATGGAGACAGAAATGCTAACTTTAGATATGCGCAAAACTTCAACCAAGGTTTTATATCACGCTACGCTACTGGAAAAGGGACCCCGATGAGGCCAGGTCCTATAGATGCCTACTTGTTTAGCCTCATAGATGAAGATAACAAGAGTATTCAGCCAGGTAACTTTGAACGTCATTGGGGTGTGTTTTACTTTGATGGACAACCGAAATACGAGCTAAACCTTGGGTCAAATAGAGGTATAAGAGGAGCTAGTGGGGTGGAGCATTTGGCTAAGAAATGGTGTGTTTTGAAAAGCAATGCAAACTTAAATAGTGATGAAGTGGCACCAAGTGTGGCCTATGCTTGTCAAAATGCTGATTGTACTAGTCTTGGGTATGGAACTTCATGTGGCAATTTAGATCTTAAAGGGAATATCTCTTATGCATTTAATAGTTACTACCAAATCAATGACCAAATGGATAGTGCTTGTAAATTCCCTGGACTTTCTATGATCACTGACAAAGATCCTTCAGTGGGAAATTGCAGATTCAAAATCATGATTCAGACAGATTCTGCTTCGATACATCCAAGTATTGGGCCTCTAGGAACACTAGTGCTCTATGTGTTCTTGTTTTTTACTATTATGTAA 1449 0.3975 MGLLVDEKLSKSLVFLLLNVLLVGSVSGIGVNWGTQATHPLSPSKVVKLMKDNGIQKVKLFDADPGILSALKKSGLQVMVGIPNDMLFTLANSLQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFESTTLPALQNIQAALTKSGLSNKVKVTVPLNADVYQSSSQKPSDGDFRTDIHDLMLQIVKFLNDNGAPFTVNIYPFLSLYEDANFPVDYAFFNGFQPAIDDNGKAYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANFRYAQNFNQGFISRYATGKGTPMRPGPIDAYLFSLIDEDNKSIQPGNFERHWGVFYFDGQPKYELNLGSNRGIRGASGVEHLAKKWCVLKSNANLNSDEVAPSVAYACQNADCTSLGYGTSCGNLDLKGNISYAFNSYYQINDQMDSACKFPGLSMITDKDPSVGNCRFKIMIQTDSASIHPSIGPLGTLVLYVFLFFTIM 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0245 482 Pfam Glycosyl hydrolases family 17 29 347 IPR000490 GO:0004553|GO:0005975
Lal4g0245 482 ProSitePatterns Glycosyl hydrolases family 17 signature. 263 276 IPR000490 GO:0004553|GO:0005975
Lal4g0245 482 SMART X8_cls 366 450 IPR012946 -
Lal4g0245 482 Pfam X8 domain 366 436 IPR012946 -
Lal4g0245 482 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 16 458 - -
Lal4g0245 482 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 458 IPR044965 GO:0004553|GO:0005975
Lal4g0245 482 Gene3D - 362 460 - -
Lal4g0245 482 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Lal4g0245 482 Gene3D Glycosidases 28 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0245 Lal-Chr4 1583004 1586546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0245 13 481 Glycoside Hydrolase AT4G31140 67.591 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0245 K19893 - gmx:100796552 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0245 4 1583004 1586546 Lal8g1547 8 19809245 19811691 PCT
Lal4g0245 4 1583004 1586546 Lal25g1081 25 14126219 14129430 PCT