Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0600 ATGGCTCGAACCATGGCTCGAGCCAAATTGCTCATGTGTGCACTATGTTTGATATTGGTCCAACTACAAGGAACCCAAGGCACAACAATAGAAGGTGTTGGTGTCAATTGGGGTGCACTAGCATCCCACCCAATGGAACCTGCTATTGTTGTGAATATGTTGAAGAGCAATGGAATCAAAAAAGTTAAACTTTTTGATTCAGATTCTTGGACAGTTAGTGCTTTTTCTAATACAGACATTGAAGTCATGGTTGGAATTCCTAATGATCAATTGAGTAAAATTGCTGGAAGTAGTGGAGATGCAGAAGATTGGGTTAAAGCAAATCTTACCAAACATTTTGGTGATAGAGGTGTCAATATCAGATATGTTTCTGTTGGAAATGAGCCATTCTTGTCAAGTTACAATGGTTCCTTTATAAAGACAACATTCCCAGCAATGCAAAATATTCAAAAGGCTATTGATAAGTTTGGCTTAGGAGACAAGGTGAAGGTGACTACAGCTATGAATGCTGATGTTTATGAATCTTCTTCAAACAAGCCATCAGATGGAATATTTAAGAGGCAAACTTATGATGAGATGATACAAATAGTGAGATTTCTTAATGAAAAAAATGCACCTTTTGTTGTTAACATATACCCTTTTCTTAATATATATCAAAATAAAGATTTCCCTGAAGAACTTGCATTCTTTGATGGTGGAGGTAAAACAATTGATGACAAAAATGTACAATATAGCAATGTGTTTGATGCAAATTTAGATACCCTTATGTGGTCACTAAAAAAAGCTGGTTACCCTGATGTGAAAATCATGGTTGGTGAAGTTGGATGGCCAACTGATGGACACATAAGTGCTAATCCAAAAAATGCAAAAAGGTTCTACCAAGGGTTTCTTAAGAAAATGGCAAGCAAAAAAGGATCACCACTTCACCCTGAACCCTTTGATGTGTACCTCTTCTCCCTTTTTGATGAGGATTTGAAGAGTATTGCCCCGGGAAACTTCGAGCGCCATTGGGGCATTTTTCGCTACGATGGAAGGTCTAAGTTCCCTATAGATTTTTCTGGTCAGGGACAAGAGAATTGGCCTGAAGAAGCAAAAGGTGTTAGGTACCAAGAGAATAAATGGTGTGTCCTAAATAGTGATGTTAAGGATATGAGCCTTGTACCTGCTGCATTAGACTATGCTTGTGCACTTGCTGATTGTACAAGCTTAGGATATGGTTGTTCTTGTGCAAATTTAGACCTGAGAGGTAATACTTCATTTGCATTCAACCAATACTTTCAGATAAAAGACCAAAGTGTTGAAGCATGTGATTTCAATGGATTGGGGAATATTGTGACAGAGGATCCATCAAATGGAAGTTGCTTGTTCCCTATAGAAATTGAGAGCAGCAAGAGTGGATTGATGATCAAAGCAATGCATACAATGGGTGCCCTTTTAATTGGATTATCAGCCTTTTTTCTAACATTTCCTTAG 1473 0.3781 MARTMARAKLLMCALCLILVQLQGTQGTTIEGVGVNWGALASHPMEPAIVVNMLKSNGIKKVKLFDSDSWTVSAFSNTDIEVMVGIPNDQLSKIAGSSGDAEDWVKANLTKHFGDRGVNIRYVSVGNEPFLSSYNGSFIKTTFPAMQNIQKAIDKFGLGDKVKVTTAMNADVYESSSNKPSDGIFKRQTYDEMIQIVRFLNEKNAPFVVNIYPFLNIYQNKDFPEELAFFDGGGKTIDDKNVQYSNVFDANLDTLMWSLKKAGYPDVKIMVGEVGWPTDGHISANPKNAKRFYQGFLKKMASKKGSPLHPEPFDVYLFSLFDEDLKSIAPGNFERHWGIFRYDGRSKFPIDFSGQGQENWPEEAKGVRYQENKWCVLNSDVKDMSLVPAALDYACALADCTSLGYGCSCANLDLRGNTSFAFNQYFQIKDQSVEACDFNGLGNIVTEDPSNGSCLFPIEIESSKSGLMIKAMHTMGALLIGLSAFFLTFP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0600 490 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 468 IPR044965 GO:0004553|GO:0005975
Lal4g0600 490 SUPERFAMILY (Trans)glycosidases 33 352 IPR017853 -
Lal4g0600 490 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 7 468 - -
Lal4g0600 490 Pfam X8 domain 373 442 IPR012946 -
Lal4g0600 490 Gene3D Glycosidases 31 359 - -
Lal4g0600 490 Pfam Glycosyl hydrolases family 17 33 352 IPR000490 GO:0004553|GO:0005975
Lal4g0600 490 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Lal4g0600 490 SMART X8_cls 373 456 IPR012946 -
Lal4g0600 490 Gene3D - 369 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0600 Lal-Chr4 4362342 4364008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0600 6 469 Miscellaneous Gene Families AT5G64790 53.233 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0600 - - gmx:100794658 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0600 4 4362342 4364008 Lal4g0600 4 4362342 4364008 ECH
Lal8g1547 8 19809245 19811691 Lal4g0600 4 4362342 4364008 PCT
Lal25g1081 25 14126219 14129430 Lal4g0600 4 4362342 4364008 PCT