Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0129 AAGGCCCATTTCACCACACAAACAAAGCCTTCTTCTCTCTCTTTTGAAAAAATAAAGCAGTTCGTGGTTTTCGCTATTATCCTTACCTCGCTCTTTCTGCGTTTTCCTTTTCTTATCGCTGCGCTTCATTCCACTTTTCGATTTTTTCCGATCTCAATACTGGCAATCATGAGTGATGAAGGAGAAAGGACTTGCCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAACACTTGAAACCATGCAAATGTGGTTATCAGATATGTGTCTGGTGCTGGCATCATATAATGGACATGGCTGAGAAGGATGACACAGAGGGGCGTTGCCCTGCTTGTCGTTCTCCATATGACAAGAATAAGATTGTCGGAATGGCTGCAAACTGTGAGAGATTGGTAGCTGAAGTTCATATGGAAAAAAGGTTGAAGAACCAGAAAGCAAAATCTAAGTCATATGAAGGACGGAAGCAGCTAAGCAATGTGCGAGTGATTCAGCGGAATCTTGTTTACATTGTGGGATTGCCTCTTAATCTGGGAGATGAAGATCTTCTCCAGCGGCGAGAATATTTTGGTCAATATGGGAAGGTCTTAAAAGTGTCGATGTCTCGAACGGCAGCTGGTGTTGTTCAGCAGTTTCCAAATAATACGTGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCGGTCCGTTGCATTCAAAATGTACATGGATTTGTTTTGGAGGATAGACCTCTAAGGATTGATCTTGATAACCAGCCTTGCAGCAATCCAGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGTTTCTCTAAAGATGAAATTAGAGGATGTAGCATTACATCAACTTGTGAGCTTGCTGATGTGTCAACAGGGTATTCAGATTCTACCTACCTTTCTGACTCTGGCCAGTCTTTCCCACCGGTCTCAAAGCCTGTTTCTCTAGGTCGTGTTCAACAAATTACTGGCGCTGCCAACAATATGCAACAACGGTCAGGGACTGTATTGCCTCCTCCCTTGGATGATTGCATGAATAACTCGCCAGGAAAACCCATTATAAAAAATGCTTCAAGTAGCTCTGCTAGCCTTGTAAGAGGTTCACCTCCTAATGGAAGCTCTGGCAGTCCTATAGGTCTTCCTGCTGCTGCCTGGGGTTCACGGACTACAAATTCTCCGCCTGCTGCTGGGGGTACATTATGCCCAAATGGCCCATCGAAGCCCAGATCTGATACAATGAGCAATGCACTGCCGTGCTCCTTAGCCGTTGCAGACACAAATCAGGCTTCACTGCATAGTGAACTGACAACGAGGCCACTGTCCAGTGATGAGAGTCATAGTATGACATCTAGGGTAAAAAATGAATCGCTGAAACCTGTTATACAGTACAATAGTGTGGATAGCAGTGATGGTGAAAAAACCTTACCCTCTGATGTTTCTCTTGGATCTTTGAATTTGAATAACCAGTTGTCTTCTCTATCATTAGCCAGAGTTAGTGATAAAGGCAGTTGTACTACAACAAACACGACAAATTCTACTGACATCACTGGACAACTGTGTAGCTTTGGTCCTGAAGAAGCAATTATTGCTACCAATGAATATTTTCATAATTTATCATCTGAGTTATCCTCAATTAACAATGATAGAAGTGCCCAGAATGAACACTACAGCCTAACTAAACCTAGTACACCACCTTTTGATTCCGTCTTAGTCAAATGTTCCCAGTCTCAAGGATCACAGATTAATTCTGACAAAATTAGAGATTCAATGATTACAAGTGCAGCTGTATCAGCTGCCACATCAGATAATGGGGTTTGTAATTCAAAGGAATGGTCTGATTTGAGATTTGATTCTCAACCCCTTGTATTATCAGGTAATGCTGAAGTGGAAGATGATGTAGCATCTTTTGATAATCAACGGCTCAAGGATCCAGAAGTTGTTTCTCGTTCTTATTTGCCAAAGTCATCTAGCTTCCTTCATGCCTCAAACGGTTATAGTCCTCATCTTCTGCAACACTGTGACCATGTTGTTGCAAATGCTGGTTCCATATCTATAGCTGATAAAGTTGGGAATGATTCTCTATTGCATGCACCTGACATATTATGCAATGGATACCCTAAAAAATTGGCAAGTATCAGCTCTTATAGTTTGCCTTATGATGAAAGAAACAAACAATGCAATGAAAGATTAGTTACTGAAGCTGTTAATACTGGAAGTGGTGCTGCTTTGGATAAGGGTGAGAGTACTATAATTTCAAATATATTCTCCATGGAGTTCGATGGCTGGGGTGACTCGCTAACATCACCTAAGAATTTGGCCAAACTGTTGGGTGATAACACTGATAACCAGAATGGCCCATTGAATAATTCTAGTACCCGGAAAGTCCAAAGTAACAATCAATCAAGATTTTCTTTTGCAAGGCAAGAGGAATCCAACATTGATGCCTTTAATCTACATCCATCATACAGTACGAGCCAGCAATTTCCAAATAGCTGTTCACTCATGCAGGAATTTTCGGAAAGAGATGTGTCTATGGATAAGTTTGGTATTGCTAATGGCTTCCATGCCAGCCTTGAGGAATCTGAAATTCTACGCAATGGTCATTTCCTTGCTTCTTCTAATAAGCCTTCTGTTGTTTCAAGATCTCAAATTTCAGCGCCGCCAGGATTTTCAGTTCCAAGCAGGCTGCCTCCTCCTGGTTTTTCGTCTAATGAGAGAATGGGTCATGCTGTTGACTCCTTTTCTGGGAATCGGTTGCTTAACCCATCTTCCTTACGTAGTAATTCATATCAGACTCCATCAACTGTAAATAATGGTGGTGCTGGAGACATTGAATTTATGGACCCAGCTATTTTAGCTGTTGGTAAGGGGAGACTGCACGGTGCATTAATCAGCCCACTGTCGGACATGCGATCCAATTATCCTCCACAATTAAATTACTTCGAAAATGAGGCAAGACTTCAAATACCTATGCAAAGATCTTTCTCACCACAGCAAAACCTTCGGTTTTCTGAATTTGAGAATAATTTTTCTCTGCTTGGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAATGGGTAATCTGGCCTCATATTCTCAGTTATCTATGCAGCAGTCTAGAAATGCAGCTTTGTCAAATGGGCAGTGGGAGACTGGAAATACTTTGGATATGGCTGAGCTTTCGAGAAATGAAAGACTTGGACTTAACAAGTTCTATAAAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAAAAGGACATTTGGGATTTGA 3300 0.4118 KAHFTTQTKPSSLSFEKIKQFVVFAIILTSLFLRFPFLIAALHSTFRFFPISILAIMSDEGERTCPLCAEEMDLTDQHLKPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPYDKNKIVGMAANCERLVAEVHMEKRLKNQKAKSKSYEGRKQLSNVRVIQRNLVYIVGLPLNLGDEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAVRCIQNVHGFVLEDRPLRIDLDNQPCSNPDCLYLHEIGSQEDSFSKDEIRGCSITSTCELADVSTGYSDSTYLSDSGQSFPPVSKPVSLGRVQQITGAANNMQQRSGTVLPPPLDDCMNNSPGKPIIKNASSSSASLVRGSPPNGSSGSPIGLPAAAWGSRTTNSPPAAGGTLCPNGPSKPRSDTMSNALPCSLAVADTNQASLHSELTTRPLSSDESHSMTSRVKNESLKPVIQYNSVDSSDGEKTLPSDVSLGSLNLNNQLSSLSLARVSDKGSCTTTNTTNSTDITGQLCSFGPEEAIIATNEYFHNLSSELSSINNDRSAQNEHYSLTKPSTPPFDSVLVKCSQSQGSQINSDKIRDSMITSAAVSAATSDNGVCNSKEWSDLRFDSQPLVLSGNAEVEDDVASFDNQRLKDPEVVSRSYLPKSSSFLHASNGYSPHLLQHCDHVVANAGSISIADKVGNDSLLHAPDILCNGYPKKLASISSYSLPYDERNKQCNERLVTEAVNTGSGAALDKGESTIISNIFSMEFDGWGDSLTSPKNLAKLLGDNTDNQNGPLNNSSTRKVQSNNQSRFSFARQEESNIDAFNLHPSYSTSQQFPNSCSLMQEFSERDVSMDKFGIANGFHASLEESEILRNGHFLASSNKPSVVSRSQISAPPGFSVPSRLPPPGFSSNERMGHAVDSFSGNRLLNPSSLRSNSYQTPSTVNNGGAGDIEFMDPAILAVGKGRLHGALISPLSDMRSNYPPQLNYFENEARLQIPMQRSFSPQQNLRFSEFENNFSLLGDSYGISSRLDQSQMGNLASYSQLSMQQSRNAALSNGQWETGNTLDMAELSRNERLGLNKFYKGYDDSKYRMPNSGDLYKRTFGI 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0129 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 133 IPR013083 -
Lal8g0129 1099 SMART rrm1_1 167 248 IPR000504 GO:0003723
Lal8g0129 1099 MobiDBLite consensus disorder prediction 779 799 - -
Lal8g0129 1099 CDD mRING-HC-C4C4_CNOT4 65 114 IPR039515 -
Lal8g0129 1099 Pfam RING/Ubox like zinc-binding domain 65 117 - -
Lal8g0129 1099 SMART rrm2_1 167 248 IPR003954 GO:0003676
Lal8g0129 1099 SUPERFAMILY RING/U-box 57 123 - -
Lal8g0129 1099 MobiDBLite consensus disorder prediction 435 457 - -
Lal8g0129 1099 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 51 278 IPR039780 GO:0004842|GO:0030014
Lal8g0129 1099 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 319 1099 IPR039780 GO:0004842|GO:0030014
Lal8g0129 1099 MobiDBLite consensus disorder prediction 326 415 - -
Lal8g0129 1099 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 51 278 - -
Lal8g0129 1099 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 319 1099 - -
Lal8g0129 1099 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 246 IPR000504 GO:0003723
Lal8g0129 1099 MobiDBLite consensus disorder prediction 352 376 - -
Lal8g0129 1099 MobiDBLite consensus disorder prediction 881 909 - -
Lal8g0129 1099 SUPERFAMILY RNA-binding domain, RBD 160 247 IPR035979 GO:0003676
Lal8g0129 1099 ProSiteProfiles Zinc finger RING-type profile. 65 113 IPR001841 -
Lal8g0129 1099 CDD RRM_CNOT4 161 246 IPR034261 -
Lal8g0129 1099 Gene3D - 167 248 IPR012677 -
Lal8g0129 1099 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 252 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0129 Lal-Chr8 883158 894034 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0129 K10643 - gmx:100796804 1293.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0129 8 883158 894034 Lal8g0129 8 883158 894034 ECH
Lal8g0129 8 883158 894034 Lal9g0250 9 1551293 1559154 PCT
Lal1g0359 1 2160558 2168859 Lal8g0129 8 883158 894034 PCT
Lal2g0264 2 1530992 1539649 Lal8g0129 8 883158 894034 PCT