Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0359 ATGAGTGACCAAGGAGAAAAGACTTGTCCTCTATGCGCAGAAGAGATGGATTTAACAGATCAGCAGTTGAAACCTTGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCACCACATAATGGACATGGCAGAGAAGGGTGACACAGAGGGGCGATGCCCTGCCTGTCGCTCTGCTTATGATAAGGAAAAGATTGTTGGGATGGCTTCAAACTGTGATAGGTTAGCGAATGAAATTAGTGTGGAGAAAAGGACGAAGAATCAGAAAGCTAAGTCTAAATCACCTGATGGAAGGAAGCAGCTCAATAGCGTGCGAGTGATTCAGCGAAACCTTGTCTACATAGTTGGATTGTCTCTCACCCTGGGAGATGAAGATCTTCTCCAGCGGCGGGAATATTTTGGGCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGGACGACAGCTGGTGTCATTCAACAGTTTCTGAATGATACATGCAGTGTGGCTTGTTTTGGAACAACAAAATATTGCCATGCATGGCTACGAAATGTGCCATGCAACAATCCCGATTGTCTATATCTCCATGAGATTGGCTCTCAAGAAGATAGTTTTTCGAAAGATGAAGTAATTTCAGAATATACTAGAAGTCGAGTTCAACAGGTCACTGGTGCCACAATCAACATGCAAAGGCGGTCAGGGAATGTATTGCCGCCTCCAATGGATGATAGCGTGAATAATTTTTCAGGGAAACCCATTATGGAGAGTGCTGCAAGTAATTCTGTTAGCACGGTAAGAGATTCACCTTTGAATGGAATGTATAGGAGGCCTGTCACCCTTCCTGCTAGTGCCGCATGGGGTATGCAGGCTACAAATTGTCAGTCCCCTGCTGGAGTTCTATCACATCCAAATGGGCAGTTCAAACCAAAACCTGATACAATCAGCAGCAGACTAGACTTTTCCTCAGTTGTCGCAGGCACAATTCAATCTCCTGTGTTGCGTTCTGATGTAACAAAGAGGGAACATTCGGGTGATGGGAATCCTAGCATGATGCCTCGAGTGAAAAATGAATTGTTGAAACCTGGTAAACATTACAATAGCATGGATACTGTGGCTAGTGCAGGTGATAAAATATCAGCTTCCGATAATTCTCACGTGCCTGTGAATTTGAACGGCAAGCTATCCTCAAAACTATTGCCCCAAGATAGTGACAGAGGCAGTTGTACTACTGCGAACACAGTAAATTCACCTGACTTAACTGGAAAATTACACAGCTCTGATCCAGAGGAAGGAATCACTACATCAAATGAAGAGATTCACGTTTTGTCCTGTGAATTGTCCTCAATTAACATTGATAGAAATGCCTTAAATGAACTCTGTTGTATATCCAACCCTAGTAGTCCGCCTCCTGATGATGTCTTGATTAAGCCTCCTCAAATTCAAGGATCACAGTACAGTGCTGACCAATTTAGAGATGTAATAATTACAGATGGAGCAGTTAAAGCTGCTACATCAGATAATGGAGTTCGTAGTTCAAGGGAACAGTCTGAATGGAGATTGGATTCTTATTCTCAAGTACTATCGAATACTGCTGAGGTGGAAGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCATTCTTCTTTGCCGGATTCAACAAGTTTCCTCCATGTATCAAACCATTCCACGCCTCGTATTCTGCAGCATGTAGAACCCTTCACTGTTGTAAATGCTGGTTCTCTATATGCCGATGAAAGAGTTGGGGATGAATCTCTATCACATCCATCTAGCTTATCATGTAATGGCCACCCTAAGAAATTGGTCAGTGGTAGCTCTTATGGTTTACCTCATGATAAAAGAAGTGACCAAAGCATTGCAAGATTAGTCACTGAAGTAGGTAATGCGGGACATGATGCTCCTATGGATAAGGGTGAGAGTTGTATAATTTCAAATATATTGTCCATGGACTCCGATGCCTGGGATGACTCACTAAAATCACCTCATAACTTAGCTAAGTTGTTGGGTGACAACACTGATAACCAGTCTGGTCCATTAAAAAAATCTAGTTCGTGGAAAGTTCAAAGTAACAATCATTCAAGGTTCTCTTTTGCGAGGCAGGAGGAGCCCAAAATCCAAAATTTCGATGTACAGCCGTCTCATACTGTCAGTCACCAACAGCCAAAGTGCCGCTCATTCATCCAGGATTTTGCAGAAAGAGACTTGTATACAGATAAATTGGGCATTGCAAATGGCTTTCGTACCAGTAACTTTGACGAAGCTGAAAATATAGGAAGTGGTCTTTTTGTTGCTTCTTCCCATAAGCTTTCTGCCTTTTCCAGAGCACAAGTTTCATCCCCGCCAGGATTTTCAGTTCCAAGCAGGCCTCCACCACCCGGTTTTTCGTCTCATGAGAGAGTGGAGCAGGCTTTTGTCTCCATATCTGGGAATTCATTGCTTGACCACTCCCCGTTGAGAAATTCATATCAGATACCCTCAGCTGGAAATATTGGCAGCATAGGGGATGTTGAATTTATGGATCCTGCAATTTTGGCAGTTGGTAAGGGGAGATATCAAGGTGCACTGAACACCTCAGCAATGGACATGCGATCAAATCTCATGCCACAATTGAATAACTTTGAAAATGAGGCCAGACTTCAATTATTGTTGGAAAGATCTCTCTCACCACAACAAAACCTTAGATATCCTGAAATTGGGAATACTTTTCCTCAAATCAGTGATTCTTATGGTATTTCTTCAAGGTTAGATCAACAAGTCAATAATCTAACCCCATTTCCTCAGATGTCTTTGCAGCAGTCAGCGAATGCAGTCTTGTCAAATGGCCAATGGGATGGTTGGAATGAGGTGCATAGTAGGAATAGTCTTGAAGTGGCTGAGCTTTTGAGAAATGGAAGGCTTGGATTTAACAAGTTCTTCTCAGGACATGATGATTCAAAGTATCGGATGCCAAACTCTGGGGATCTTTACAGCAGAAAATTTGGGATGTAA 3006 0.4242 MSDQGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKGDTEGRCPACRSAYDKEKIVGMASNCDRLANEISVEKRTKNQKAKSKSPDGRKQLNSVRVIQRNLVYIVGLSLTLGDEDLLQRREYFGQYGKVLKVSMSRTTAGVIQQFLNDTCSVACFGTTKYCHAWLRNVPCNNPDCLYLHEIGSQEDSFSKDEVISEYTRSRVQQVTGATINMQRRSGNVLPPPMDDSVNNFSGKPIMESAASNSVSTVRDSPLNGMYRRPVTLPASAAWGMQATNCQSPAGVLSHPNGQFKPKPDTISSRLDFSSVVAGTIQSPVLRSDVTKREHSGDGNPSMMPRVKNELLKPGKHYNSMDTVASAGDKISASDNSHVPVNLNGKLSSKLLPQDSDRGSCTTANTVNSPDLTGKLHSSDPEEGITTSNEEIHVLSCELSSINIDRNALNELCCISNPSSPPPDDVLIKPPQIQGSQYSADQFRDVIITDGAVKAATSDNGVRSSREQSEWRLDSYSQVLSNTAEVEDDVTSFDNQRLKDPEVVCHSSLPDSTSFLHVSNHSTPRILQHVEPFTVVNAGSLYADERVGDESLSHPSSLSCNGHPKKLVSGSSYGLPHDKRSDQSIARLVTEVGNAGHDAPMDKGESCIISNILSMDSDAWDDSLKSPHNLAKLLGDNTDNQSGPLKKSSSWKVQSNNHSRFSFARQEEPKIQNFDVQPSHTVSHQQPKCRSFIQDFAERDLYTDKLGIANGFRTSNFDEAENIGSGLFVASSHKLSAFSRAQVSSPPGFSVPSRPPPPGFSSHERVEQAFVSISGNSLLDHSPLRNSYQIPSAGNIGSIGDVEFMDPAILAVGKGRYQGALNTSAMDMRSNLMPQLNNFENEARLQLLLERSLSPQQNLRYPEIGNTFPQISDSYGISSRLDQQVNNLTPFPQMSLQQSANAVLSNGQWDGWNEVHSRNSLEVAELLRNGRLGFNKFFSGHDDSKYRMPNSGDLYSRKFGM 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0359 1001 Gene3D - 111 165 IPR012677 -
Lal1g0359 1001 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 163 1001 IPR039780 GO:0004842|GO:0030014
Lal1g0359 1001 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 162 IPR039780 GO:0004842|GO:0030014
Lal1g0359 1001 SUPERFAMILY RING/U-box 3 66 - -
Lal1g0359 1001 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Lal1g0359 1001 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Lal1g0359 1001 SUPERFAMILY RNA-binding domain, RBD 104 149 IPR035979 GO:0003676
Lal1g0359 1001 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Lal1g0359 1001 MobiDBLite consensus disorder prediction 390 425 - -
Lal1g0359 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Lal1g0359 1001 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 162 - -
Lal1g0359 1001 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 163 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0359 Lal-Chr1 2160558 2168859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0359 K10643 - gmx:100813427 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0359 1 2160558 2168859 Lal1g0359 1 2160558 2168859 ECH
Lal1g0359 1 2160558 2168859 Lal2g0264 2 1530992 1539649 LSH
Lal1g0359 1 2160558 2168859 Lal8g0129 8 883158 894034 PCT