Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0250 CACCTTGTGGTTTTTCTCTACCCCTCTTACCCTTTTGCTAAATTTTTGTGTGTCTTCTTTCGTTATTGTGCGCTTCTTCTCAGACAATCTCCTCCTCACATTTTCATCGATCCCATCACTTTTTCATTCAAGGCAACCATGAGTGACCAAGGAGAAAGGACTTGTCCTCTCTGTGCCGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGCAAATGTGGTTACGAGATATGTGTCTGGTGTTGGCACCACATAATGGACATGGCCGAGAAGGATGACACGGAGGGGCGATGCCCTGCTTGTCGTTCTGCTTATGATAAGGAAAAGATTGTTGGGATGGCTTCAAACTGTGAGAGATTGCTGAATGGAGTTAATGTGGAGAAAAAGATGAAGAATCAGAAAGCTAAGTCTAAATCATCTGATGGACGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAACCTTGGCGATGAAGATCTTCTCCAGAGATGGGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTATCAATGTCTCGGACGGCAGCTGGTGTTATTCAACAGCTTCCGAATGATGCATGCAGTGTGGCTTGTTTTGGAACAACAAAATATTGCCATGCATGGCTACGGAATGTGCCTTGCAACAATCCCGATTGTTTATATCTGCATGAGGTTGGCCTTCAAGAAGATAGTTTTTCGAAAGATGAAGTAATTTCAGCATATACCAGAAGTCGAGTTCAACAGATTACTGGTGCCACAATCAATACGCAAAGGCGATCAGGGAATGTATTGCCGCCCCCAATGGATGATAGTGTGAATAATTCTTCAGGGAAGCCCATTATGGGAAGTGCTTCAAGTAATACTGTTAGCACTGTAAGATGTTCACCTCCGAATGGAATGTATGGTAGGCCTGTCACCCTTCCCGCTAGTGCGGCATGGGGTACACAGGCCACAAATTGTCAGCCCCCTGCTGAAGGCCTGTCATGTCCAAATGGTTCATCCAACTCAAAATCATATACGGTCCGCAACATGCTAGACTTTTCCGCAGTTGTTGCTGGTACAATTCAAGCTCCTGCATTGCATTCTGACATAACAAAGAGGCCACATTCAGGTGATGGGAGTAATAACATGATGCCTAGAGTGAAAAATGAATCTTTTAAACCTGCTAAACAATACAATAGCATGGACACTATGGCTAGTGCAGGTGAAAAAACATTAACTTCAGATGATACTCACATGCCTGGGAATTTGAATGGCCAGCTATCTTCAATGCCATTGTCCCAGGATAGTGATAGAGGCAGTTCCACTACTGCAAACACAGTAAATTCAACTGACTTAACTGGACAATCACACAGCTCTGATTCTGAGGAAGCAATCACTATTACCAATGAAGAGATTCAACATTTGTCTGGTGAATTGTCCTCGATTAACATTGATAGAAATGATGTAAATGAACCATGTGGTATATCCAAACCTAGTAGTCCGCCTCCTGATGATGCCTTGATCAAGTCTCCTCAAATTCAAGAATTACAGTATAGTGCTGACCAATTTAGAGATGTAATTATTACAAATGGAGCAGTTAAAGCTGCTACATCAGATAATGGGGTTTGTAATTCAATAGAACAGTCTGAATGGGGACTCGATTCTCAATCTCAAGTACTATCAAATATTGCTGAAGTGGAAGATGATGTAACATCTTTTGATAATCAAAGACTCGAGGATCCAGAAGTTGTTTGTCATTCTTATTTGCCGAATTCAACAAGTTTTCTTCATGTATCAAACCATTATACCCCTCGTATTCTGCAGCATACTGAACCCTTTACTGCTGTAAATGCTGGTTCTCTCTCTGCCGATGATAGAGTCAGGGATGGATCTCTATTACATTCGTCCAGCTTATCATGTAATGGCTACCCTGAGAAATTGGTAAGTGGCAGCTCTTATGGTTTGCCTCGTGATAAAAGTAGTGGCCGAAGCATTGGAAGATTAGTTAGTGAATTAGTTAATGCTGGACATGATGCTGCTATAGATAAAGGTGAGAGTTGTATAATATCAAATATATTATCCATGGACTTCGATGCCTGGGATGACTCACTAACATCACCTCATAATTTAGCTAAGTTGTTGGGTGACAACACTGATAACCAGTCCGGTCCATTAAAAAAATCAAGTTCTTTGAAACTTCAAAGTAACAATCAATCAAGGTTCTCTTTTGCAAGGCAGGAGGAACCCAAAAACCAAAACTTCGATATACATCCATCTTATGCTGTCAGCCAGCAGCAGCAAAAGAGACACCCATTCATCCAGGATTTTGTAGAGAGAGACTTATATACGGATAAATATGGCATTGTGAATGGCTTTCCTACCAGTAATTTTGAGCAAGCTGAAAATATAGGCGGTGGTCATTTTGTTGCTTCTTCCAATATGCTTTCCGATTTATATGTTCATTTGATGGTTTTCCTTCTCTTATGGTTGACAGCCATTTCAAGAGCACAAGTTTCAGCCCCACCGGGATTTTCGGTTCCAAGCAGGCCTCCACCACCTGGTTTTTCATCTCATGAGAGAGTGGGACATGCTTTTGATTCCATATCTGGAAATTCATTGCTTGACCATTCCTCCATGAGAAATTCATATCAGACACCCTCAGCTGGAAATATTGGCAGTGCAGGGGATGTTGAGTTTATGGATCCTGCTATTTTGGCAGTTGGTAAGGGGAGACATCAAAGTACATTGAACAGCCCAGCAATGGACATGCGATCAAATTTCAGGCCACAATTGAATCACTTTGAAACTGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCAACACAACAAAACCCTAGATATCCTGAAATTGGGGAATCATTGTCTCAACTTGGTGATTCTTATGGTATTTCTTCAAGGTTAGATCAACAAGTCAATAATCTAGCCCCATTCCCTCGTCTGTCTTTACAGCAGTCAACAAATGCAGTCTTGTCAAATGGCCAATGGGATGGTTGGAATGGGGTGCAGACTGGGAATAATCTGGAAGTGGCTGAGCTTTTGAGAAATGAAAGGCTTGGATTTAACAAGTTTTACTCGGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATTTGA 3189 0.4167 HLVVFLYPSYPFAKFLCVFFRYCALLLRQSPPHIFIDPITFSFKATMSDQGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSAYDKEKIVGMASNCERLLNGVNVEKKMKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRWEYFGQYGKVLKVSMSRTAAGVIQQLPNDACSVACFGTTKYCHAWLRNVPCNNPDCLYLHEVGLQEDSFSKDEVISAYTRSRVQQITGATINTQRRSGNVLPPPMDDSVNNSSGKPIMGSASSNTVSTVRCSPPNGMYGRPVTLPASAAWGTQATNCQPPAEGLSCPNGSSNSKSYTVRNMLDFSAVVAGTIQAPALHSDITKRPHSGDGSNNMMPRVKNESFKPAKQYNSMDTMASAGEKTLTSDDTHMPGNLNGQLSSMPLSQDSDRGSSTTANTVNSTDLTGQSHSSDSEEAITITNEEIQHLSGELSSINIDRNDVNEPCGISKPSSPPPDDALIKSPQIQELQYSADQFRDVIITNGAVKAATSDNGVCNSIEQSEWGLDSQSQVLSNIAEVEDDVTSFDNQRLEDPEVVCHSYLPNSTSFLHVSNHYTPRILQHTEPFTAVNAGSLSADDRVRDGSLLHSSSLSCNGYPEKLVSGSSYGLPRDKSSGRSIGRLVSELVNAGHDAAIDKGESCIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDNQSGPLKKSSSLKLQSNNQSRFSFARQEEPKNQNFDIHPSYAVSQQQQKRHPFIQDFVERDLYTDKYGIVNGFPTSNFEQAENIGGGHFVASSNMLSDLYVHLMVFLLLWLTAISRAQVSAPPGFSVPSRPPPPGFSSHERVGHAFDSISGNSLLDHSSMRNSYQTPSAGNIGSAGDVEFMDPAILAVGKGRHQSTLNSPAMDMRSNFRPQLNHFETEARLQLLMQRSLSTQQNPRYPEIGESLSQLGDSYGISSRLDQQVNNLAPFPRLSLQQSTNAVLSNGQWDGWNGVQTGNNLEVAELLRNERLGFNKFYSGYDDSKYRMPNSGDLYNRTFGI 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0250 1062 MobiDBLite consensus disorder prediction 381 404 - -
Lal9g0250 1062 MobiDBLite consensus disorder prediction 721 748 - -
Lal9g0250 1062 MobiDBLite consensus disorder prediction 417 469 - -
Lal9g0250 1062 ProSiteProfiles Zinc finger RING-type profile. 55 103 IPR001841 -
Lal9g0250 1062 MobiDBLite consensus disorder prediction 373 404 - -
Lal9g0250 1062 SUPERFAMILY RING/U-box 46 112 - -
Lal9g0250 1062 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 209 1062 IPR039780 GO:0004842|GO:0030014
Lal9g0250 1062 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 40 208 IPR039780 GO:0004842|GO:0030014
Lal9g0250 1062 SUPERFAMILY RNA-binding domain, RBD 150 194 IPR035979 GO:0003676
Lal9g0250 1062 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 40 208 - -
Lal9g0250 1062 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 209 1062 - -
Lal9g0250 1062 Pfam RING/Ubox like zinc-binding domain 55 107 - -
Lal9g0250 1062 CDD mRING-HC-C4C4_CNOT4 55 104 IPR039515 -
Lal9g0250 1062 MobiDBLite consensus disorder prediction 489 513 - -
Lal9g0250 1062 MobiDBLite consensus disorder prediction 846 867 - -
Lal9g0250 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 123 IPR013083 -
Lal9g0250 1062 Gene3D - 157 211 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0250 Lal-Chr9 1551293 1559154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0250 K10643 - gmx:100813427 1441.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0250 9 1551293 1559154 Lal9g0250 9 1551293 1559154 ECH
Lal8g0129 8 883158 894034 Lal9g0250 9 1551293 1559154 PCT