Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0264 ATGAGTGACCAAGGAGAAAGGACTTGTCCTCTATGCGCGGAAGAGATGGATTTAACAGACCAGCAGTTGAAACCTTGCAAATGTGGTTATGAGATATGTGTATGGTGTTGGCACCACATAATGGACATGGCCGAGAAGGATGACGTAGAGGGGCGATGCCCTGCCTGTCGTTTTGCTTATGATAAGGAAAAGATTGTTGGGATGGCTTCAAACTGTGAGAGACTGGTGAATGGAATTACTGTGGAGAAAAAGATGAAGAATCAGAAAGCAAAGTGTAAATCATCTGATGGACGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGCGGAATCTTGTTTACATAGTTGGGCTGCCTCTCAACCTGGGTGATGAAGATCTTCTCCAGCGGCTGGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTAGGACGACAGCTGGTCTCATTCAACAGTTTCCAAATGATACATGCAGTGTGGCTTGTTTTGGAACAACAAAATATTGCCATGCATGGCTACAAAACGTGATTTTTTGTGACCAGCCATGCAACAATCCCAATTGTCTATATCTGCATGAGATTGGCTCTCAGGAAGATAGTTTCTCAAAAGATGAAATAATTTCAGCATACACAAGAAGTCGAGTTCAACAGATTACGGGTGCCACAATCAACCTGCAAAGGCGGTCAGGAAATGTATTGCCGCCTCCAATGGATGATAGCATGGATAATTCTTCAGGGAAGCCCATTATGGAAAGTGCTCCGAGCAATTCTGTTAGCACTGTAAAAGGTTCACCTCCGAATGGAATGTATGAGAGGCCCATGTCCCTTCCTGCTAGTGCCGCATGGGGTACACAGGCTACAAATTCTCACCCCCCTGCTGGAGCTCTATCATATCCAAATGGGCTGTCCAACCGAAAACCAGATACGGTCAGTAGCAGCCTAGACTTCTCCGCAGTTGTTGCAAGCACAATTCAAGCTCCTGCGTTGCATTCTGATGTAACAAAGAGACCACATTCAGGTGATGGGAGTTGTAGCATGATGCCTAGAGCAAAAAATGAATTATTGAAACCTGCTAAAGAATGCAATAGTATGGAGACTCTGGCTGGTGCAGGTGAAAAAACATCAACTTCTGATGATTCTCATGTGCCTGTGAATTTGAAGGGCCAGCTGTCTTCAATACCACGGTCTCAAGATAGTGATAGAGGCATTTGTACTACTGCAAATACAGTAAATTCAACTGACTTAACTAGACAACCACACAGCTCTGGTCCTGAAGAAAAAACCAGTGCTACTAATGAAGATATTGGACATATGTCATGTGAATTGTCCTCAATTAACATCGATAGAAATGCTGTAAACGAACTCTATGGTATATCCAAACATAGTAGTCCACTTCGTGGTGATGTATTGATCAAGTCTCCTCAAATTCAAGTATTACAGTATAGTGATGACCAATTTAGAGATGTAATAATTACTAATGGAGCAGTTAAACCTGCTACATCAGATCATGAGGTTTCTAATTCAATGGGACAGTCTGAGTGGAGATTAGATTCTCAATCTCAAGTACTATCAAATACTGCTGAGGTGGAAGATGATGTAACATCTTTTGATAATCAAAGACTCAAGGACCCCGAAGTTGTTTGTCATTCTTATTCGCCGAAGCCAACAAATTTCCTCCATGCATCAAACCGTTCTACCCCTCGCACTCTGCAGCATGCAGAACCGTTTACTTCTGTAAATGGCGGTTCTCTGTCTGCAGATGATAAAGTTGGGGATGAATCTCTACTATATTCATCTAGCTTACTATGTAATGGTTACCCTGACAAATTGGTCAGTGGCAGCTCTAATGGTTTGCCTCATGATAAAGGAAGTAGCCAAAGCATTGGAAGATTAGTTAGTGAAGTAGTTAATGCTGGGCATGATGCTGCTATGGATAAGGGCGAGAATTGTATAATTTCGAATATATTGTCCCTGGACTTCGATGCCTGGGATGACTCACTAACATCACCTCATAACTTAGCTACATTGTTGGGTGACAACACAGATAACCAGTCTGGCCCATTAAAAAAATCTAGTTCGTGGAAAGTTCAAAGTAACAATCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAACCCAAAATCCAAAACTTTAATGTACATCCATCTCATCTTGTCAGCCAGCAACAGTCGAAGAGCCACCCATTCTTTCGAAATTTTGAAGAAAGAGAGTTGTATATGGATAAAAGTGGCATTGCAAATGGTTTTCCGCCTAGTAACTTCGAAGAAGCTGAAAATATAGGCAGTGGTCATTTTGTTGCTTCTTCCAAAAAGCTTTCTGCCATTCCAAGAGCACATGTTTCAGCCCCACCAGGATTCTCAGTTCCAAGCAGGCCTCCCCCACCTGGTTTTTCGTCTCATGAGAGAGTGGAGCAGTCTTTTGACTCCATATCTGGGAATTCATTGCTCGAACATTCCTCCTTCTTGAGAAACTCTTATCATACACCCTCAGCTGGAAATGTTGGTAGCGCAGGGGATGTTGAGTTTATGGATCCTGCTATTTTGGCAGTTGGTAAGGGGAGACATCAAGGTGCATTGAACAGCCCAGCAATTGACATGCGATCAAATTTGATGCCACAGTTGAATTACTTCGAAAATGAAGCCAGACGACAACTATTGATGCAAAGATCTCTCTCACCACAACAAATCCTTAGATATCCTGAAATTGGGAATACCTTTTCTCAACTTGGTGATTCTTATGGTATTTCTTCAAGGTTAGATCAACAAGTCAATAATCATCTAGCCTCATTCCCCCAGCTCTCTTTGCAGCAGCCAAGAAATGCAGTCTTGTCAAACGGCCAATATGATGGTTGGAATGAGATGCAGGGTGGGAATAGACTGGAAGTGGCTGAGCTTTTGAGAAATGAAAGGCTTGGATTTAATAAGTTCTACTCAGGATATGATGATTCAAAGTATCGGATGCCAAATTCTGGGGATCTTTACAACAGAACTTTTGGGATATGA 3027 0.4235 MSDQGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDVEGRCPACRFAYDKEKIVGMASNCERLVNGITVEKKMKNQKAKCKSSDGRKQLSSVRVIQRNLVYIVGLPLNLGDEDLLQRLEYFGQYGKVLKVSMSRTTAGLIQQFPNDTCSVACFGTTKYCHAWLQNVIFCDQPCNNPNCLYLHEIGSQEDSFSKDEIISAYTRSRVQQITGATINLQRRSGNVLPPPMDDSMDNSSGKPIMESAPSNSVSTVKGSPPNGMYERPMSLPASAAWGTQATNSHPPAGALSYPNGLSNRKPDTVSSSLDFSAVVASTIQAPALHSDVTKRPHSGDGSCSMMPRAKNELLKPAKECNSMETLAGAGEKTSTSDDSHVPVNLKGQLSSIPRSQDSDRGICTTANTVNSTDLTRQPHSSGPEEKTSATNEDIGHMSCELSSINIDRNAVNELYGISKHSSPLRGDVLIKSPQIQVLQYSDDQFRDVIITNGAVKPATSDHEVSNSMGQSEWRLDSQSQVLSNTAEVEDDVTSFDNQRLKDPEVVCHSYSPKPTNFLHASNRSTPRTLQHAEPFTSVNGGSLSADDKVGDESLLYSSSLLCNGYPDKLVSGSSNGLPHDKGSSQSIGRLVSEVVNAGHDAAMDKGENCIISNILSLDFDAWDDSLTSPHNLATLLGDNTDNQSGPLKKSSSWKVQSNNQSRFSFARQEEPKIQNFNVHPSHLVSQQQSKSHPFFRNFEERELYMDKSGIANGFPPSNFEEAENIGSGHFVASSKKLSAIPRAHVSAPPGFSVPSRPPPPGFSSHERVEQSFDSISGNSLLEHSSFLRNSYHTPSAGNVGSAGDVEFMDPAILAVGKGRHQGALNSPAIDMRSNLMPQLNYFENEARRQLLMQRSLSPQQILRYPEIGNTFSQLGDSYGISSRLDQQVNNHLASFPQLSLQQPRNAVLSNGQYDGWNEMQGGNRLEVAELLRNERLGFNKFYSGYDDSKYRMPNSGDLYNRTFGI 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0264 1008 MobiDBLite consensus disorder prediction 282 296 - -
Lal2g0264 1008 Gene3D - 111 165 IPR012677 -
Lal2g0264 1008 SUPERFAMILY RING/U-box 3 66 - -
Lal2g0264 1008 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Lal2g0264 1008 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 162 - -
Lal2g0264 1008 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 163 1008 - -
Lal2g0264 1008 MobiDBLite consensus disorder prediction 247 266 - -
Lal2g0264 1008 SUPERFAMILY RNA-binding domain, RBD 104 150 IPR035979 GO:0003676
Lal2g0264 1008 MobiDBLite consensus disorder prediction 789 812 - -
Lal2g0264 1008 MobiDBLite consensus disorder prediction 230 312 - -
Lal2g0264 1008 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 162 IPR039780 GO:0004842|GO:0030014
Lal2g0264 1008 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 163 1008 IPR039780 GO:0004842|GO:0030014
Lal2g0264 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Lal2g0264 1008 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Lal2g0264 1008 MobiDBLite consensus disorder prediction 391 434 - -
Lal2g0264 1008 CDD mRING-HC-C4C4_CNOT4 9 57 IPR039515 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0264 Lal-Chr2 1530992 1539649 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0264 K10643 - gmx:100801880 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0264 2 1530992 1539649 Lal2g0264 2 1530992 1539649 ECH
Lal1g0359 1 2160558 2168859 Lal2g0264 2 1530992 1539649 LSH
Lal2g0264 2 1530992 1539649 Lal8g0129 8 883158 894034 PCT