Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1045 ATGATGGTGGATACTTCAACCCATGATCGATTCCATTACCAAAGACTCGACTTTAAGCGTTGGGTTCCAATATTATTAACTTCCCACAAGACCCTTTTCACGATTCTCTGGATCGCCGCATTTGCATCGGTTTTCGTGTGGCAGAGGAACGTAGTCGGTGGTTTCTTCGTGTTTGGCCGTGTCACGGTGGCGGCGAGGCCCATACCGAAGCTGAGACCGGTGGCTTTCAATTTAACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTGAACACTGAAGCATTTGAGAGGGCAATTTCGGCAATCTCTAAATTAGGGAAGAAAGGTGGTGGTCAGATTAACGTGCCTCCGGGGCGTTGGCTTACGGCGCCGTTTAATCTTACCAGTCATATGACTCTATTCTTAGCTGAAAATGCTGTTATACTTGGATTTGATGATGAAAAGTATTGGCCATTAATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGTCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACGGGGCATAACGGTACCATAAATGGACAAGGACAAACGTGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCATACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCACTAATATTACTCTGCGCGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAGAACATTACAATAAAACATGTTACGATACTGGCTCCTGTACTCAAAGCTCCAAATACAGATGGCATAGATCCTGGCAAGTATATTCTACTGAACTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTACAGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAAGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATTGTCAGTGCTGGCATATCAATAGGCAGTGAGATGTCTGGTGGGGTATTCAATGTAACGGTGGAGAACCTTCTTGTATGGGACTCTAGACGTGCAGTGAGGATTAAGACTGCTCCTGGACGTGGTGGATACGTGCGCCAAATAACTTATCGGAATCTAACATTTGAGAATGTCCGTGTCGGAATTGTTATGAAGACAGATTATAATGAACATCCTGATGATGGGTATGACCGTACAGCACTTCCAGTACTCAGAGACATAAGCTTCACTACCGTCTATGGCCACGGAGTCCGTGTGCCAGTACGTATTCATGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTCAGGATATGTCAATTGGGCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCCTTTGTTCAAGGCCGCGTAATCGGGGCCATTTTTCCTGCTCCCTGTGAGAACCTTGATCGATACAACGAGCAAGGACAGCTGGTCAAGCATTCTGCATCTCATAATGTAACAGATATAGATTATGATTTTTGA 1503 0.4418 MMVDTSTHDRFHYQRLDFKRWVPILLTSHKTLFTILWIAAFASVFVWQRNVVGGFFVFGRVTVAARPIPKLRPVAFNLTDFGGVGDGVTLNTEAFERAISAISKLGKKGGGQINVPPGRWLTAPFNLTSHMTLFLAENAVILGFDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIKHVTILAPVLKAPNTDGIDPGKYILLNSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGKPSKNIMIRNLVVRSIVSAGISIGSEMSGGVFNVTVENLLVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDRTALPVLRDISFTTVYGHGVRVPVRIHGSEEIPVRNVTFQDMSIGLTYKKKHIFQCAFVQGRVIGAIFPAPCENLDRYNEQGQLVKHSASHNVTDIDYDF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1045 500 PANTHER PECTIN LYASE-RELATED 22 498 - -
Lal7g1045 500 SUPERFAMILY Pectin lyase-like 60 473 IPR011050 -
Lal7g1045 500 SMART pbh1 277 298 IPR006626 -
Lal7g1045 500 SMART pbh1 243 270 IPR006626 -
Lal7g1045 500 SMART pbh1 311 333 IPR006626 -
Lal7g1045 500 SMART pbh1 368 389 IPR006626 -
Lal7g1045 500 SMART pbh1 339 360 IPR006626 -
Lal7g1045 500 Pfam Glycosyl hydrolases family 28 171 459 IPR000743 GO:0004650|GO:0005975
Lal7g1045 500 Gene3D - 61 462 IPR012334 -
Lal7g1045 500 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1045 Lal-Chr7 16591285 16596512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1045 10 499 Glycoside Hydrolase AT1G19170 74.502 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1045 - - gmx:100818529 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1045 7 16591285 16596512 Lal7g1045 7 16591285 16596512 ECH
Lal7g1045 7 16591285 16596512 Lal19g1187 19 15299920 15305428 LSH
Lal7g1045 7 16591285 16596512 Lal17g1485 17 16288814 16291693 PCT
Lal7g1045 7 16591285 16596512 Lal4g1511 4 19282313 19290156 PCT
Lal17g1485 17 16288814 16291693 Lal7g1045 7 16591285 16596512 PCT
Lal4g1511 4 19282313 19290156 Lal7g1045 7 16591285 16596512 PCT