Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1485 ATGGTAGAATTCAAACATTGGTTGTTTCCATCAGCCTCTACCCTCTTTACTTTTCTTTGGATTGCTGTGTTTGCTTCAGTTTTCTTGTGGCAGAAGAATGAAGTTGGTGGCTACTTTGTTTTTCAGGATGGTACTTCTTTAAGGACAATGTTACCTTTGCTAAGGCCAGTGTCTTTTAATTTGACAGATTTTGGAGGGGTTGGTGATGGAGTTACCCTTAATACTAAGGCCTTTGAGAGAGCTATTTCTGAAATCTCTAAGTTAAGGGACAAAGGTGGTGGTCAACTTAATGTTCCACCTGGTCTTTGGCTTACAGCACCCTTTAATCTCACTAGTCATATCACTCTTTTTCTAGCTCAAGATGCTGCCATACTTGGAATTCAGGTTAAAGATAACCCTTCGCCTGATCCGGAAGACTTATGTGGAGGGAGCATGTTGGGAAGTAAATCGCACATCGCCTACCTCATCGATGAAAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAACACCTTGGACCTCGTTATAGCAGCTTGATTCATGGTCAAAATCTTAGAGATGTTGTAATAACAGGACATAATGGTACTATAAATGGACAAGGACAGACATGGTGGACAAAACATCTTCATAAGCTTCTTAACCATACAAGAGGGCCACTTGTTCAGCTTATGTGGTCTAGCGACATCGTGATCTCGAATATTACTTTGCGCGATTCGCCGTTTTGGACACTTCATCCATATGATTGCAAGAATGTTACTATAAAAAGTGTAACAATATTGGCTCCTGTATATAAAGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGATTGTTATATAAGTGTTGGGGATGATGCAATTGCGATAAAAAGTGGATGGGATCAATATGGAATTGCTTATGGAAAACCTTCTAGAAACATAGTAATCCGAAACCTCGTTGTTCGATCTAATGTCAGTGCTGGAATCTCAATAGGGAGTGAAATGTCTGGTGGTGTATCAAATGTGACAATAGAGAACATTCTTGTATGGAACTCAAGGCGTGCCATAAGAATCAAAACTGCTCCCGGACGAGGTGGATATGTGTCACAAATAACGTACAGGAATCTAACTTTTAACAATGTAGGAGTTGGAATTGTTATCAAGACCGATTACAATCAACACCCTGATGGTAGATATGACCCAAAAGCACTTCCGATACTCAAAGATATAAGTTTCACCAATGTTCGCGGCGAGGGAGTTAAAGTACCGGTAAGAATTCAAGGTAGTGAAGAAATTCCAGTTAGAAATGTGACTTTTCATGATATGTTAGTTGGTATAACCAAACAGAAAAAACATATTTTCCAATGTGCCTTTGTTCAAGGTCAAGTAATAGGTACTATTTTTCCTGCTCCTTGTGGCAACTTTGATCAATACAATGAGCAAGGGAAACTAGTTAAGCATTCAAGTACTTTCAATGTAACAGATATAGATTATGAAATTTGA 1518 0.3933 MVEFKHWLFPSASTLFTFLWIAVFASVFLWQKNEVGGYFVFQDGTSLRTMLPLLRPVSFNLTDFGGVGDGVTLNTKAFERAISEISKLRDKGGGQLNVPPGLWLTAPFNLTSHITLFLAQDAAILGIQVKDNPSPDPEDLCGGSMLGSKSHIAYLIDEKYWPLMPPLPSYGYGREHLGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKHLHKLLNHTRGPLVQLMWSSDIVISNITLRDSPFWTLHPYDCKNVTIKSVTILAPVYKAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWNSRRAIRIKTAPGRGGYVSQITYRNLTFNNVGVGIVIKTDYNQHPDGRYDPKALPILKDISFTNVRGEGVKVPVRIQGSEEIPVRNVTFHDMLVGITKQKKHIFQCAFVQGQVIGTIFPAPCGNFDQYNEQGKLVKHSSTFNVTDIDYEI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1485 505 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 10 129 - -
Lal17g1485 505 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 149 503 - -
Lal17g1485 505 PANTHER PECTIN LYASE-RELATED 10 129 - -
Lal17g1485 505 PANTHER PECTIN LYASE-RELATED 149 503 - -
Lal17g1485 505 SMART pbh1 344 365 IPR006626 -
Lal17g1485 505 SMART pbh1 254 281 IPR006626 -
Lal17g1485 505 SMART pbh1 373 394 IPR006626 -
Lal17g1485 505 SMART pbh1 282 303 IPR006626 -
Lal17g1485 505 SMART pbh1 316 338 IPR006626 -
Lal17g1485 505 Gene3D - 45 468 IPR012334 -
Lal17g1485 505 SUPERFAMILY Pectin lyase-like 49 478 IPR011050 -
Lal17g1485 505 Pfam Glycosyl hydrolases family 28 183 464 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1485 Lal-Chr17 16288814 16291693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1485 8 505 Glycoside Hydrolase AT3G42950 67.717 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1485 - - adu:107479176 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1485 17 16288814 16291693 Lal17g1485 17 16288814 16291693 ECH
Lal17g1485 17 16288814 16291693 Lal4g1511 4 19282313 19290156 LSH
Lal7g1045 7 16591285 16596512 Lal17g1485 17 16288814 16291693 PCT
Lal19g1187 19 15299920 15305428 Lal17g1485 17 16288814 16291693 PCT
Lal17g1485 17 16288814 16291693 Lal7g1045 7 16591285 16596512 PCT
Lal17g1485 17 16288814 16291693 Lal19g1187 19 15299920 15305428 PCT