Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1511 ATGGTAGAGTACTCAACAATACATAAAAAAGTGCATGACTTGAAGCTTTTGTTTCCATCATCATTTACACTCTTTACTTTTCTATGGATTGTTGTGTTTGCTTCAGTTTTCTTATGGCAAAGGAATGCAGTTGGTGGGTACTTTGTGTTAATGGATGGTAGCCCTATAAGGACATTACCTTTGTTAAGGCCAGTGGATTTTAATTTAATAGATTTTGGAGGAGTTGGTGATGGTGTTACTATAAATACTAAGGCTTTTGAAAAAGCTGTTTTTGAAATATCAAAGTTAGGGGACAAAGGTGGTGGTCAACTTAATGTTCCATCTGGTTTTTGGCTTACAGCACCCTTTAATCTTACTAGTCATATCACTCTTTTTCTGGCTCAAGATGCTGTTATACTTGGAATTCAGGATGAAAAGTATTGGCCATTGATGCCTCCATTGCCTTCATATGGCTATGGGAGGGAGCACCTAGGACCTAGATATAGCAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTCATAACAGGACATAATGGTACCATAAATGGACAAGGACAAATGTGGTGGACAAAATATCTTCATAAGCTTCTCAATCACACAAGGGGTCCACTTGTTCAGCTTATGTGGTCTAGTGACATTGTAATCTCTAATATTACTTTGCTTGATTCTCCTTTTTGGACACTTCATCCATATGATTGCAAAAATGTTACAATAAAAAATGTTACCATATTGGCTCCTACATATAAAGCTCCAAATACTGATGGCATAGATCCTGGCAAGTATATTTATATTCTGCTAAATTCTTCTGAGGATATGTTGATTGAGGATTGTTACATAAGTGTTGGGGATGATGCAATTGCAATAAAAAGTGGTTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAGAAATATAGTAATCCGAAATCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATTGGAAGTGAAATGTCTGGCGGGGTATCCAATATCACAATAGAAAACATTCTTGTATGGAACTCAAGGCGTGCTATAAGGATCAAAACCGCTCCGGGAAGAGGTGGATATGTATCCCAAATAACATACAAGAATTTAACTTTTAACAACGTTCGAGTCGGAATTGTTATCAAAACTGATTACAATCAACACCCTGATAATAGATATGATCCGAATGCGCTTCCGATACTTAAAGACATAAGTTTCACCAATGTTCGAGGCAAGGGAGTTAAAGTAGCAGTAAGAATTCAAGGTAGTGAAGAGATTCCGATTAGAAATGTAACTTTTCATGATATGTTAGTTGGGATAACAAAAAAGAAGAAGCATATATTCCAATGTGCATTTGTTGAAGGTAGGGTAATAGGTACAATATTTCCTGCTCCTTGTGGGAACTTTGATCAGTACAATGAGCAAGGGAAGTTGGTTAAGCATTCAACTTTTCACAATGTAACAGATATAGATTATGAAATTTGA 1482 0.365 MVEYSTIHKKVHDLKLLFPSSFTLFTFLWIVVFASVFLWQRNAVGGYFVLMDGSPIRTLPLLRPVDFNLIDFGGVGDGVTINTKAFEKAVFEISKLGDKGGGQLNVPSGFWLTAPFNLTSHITLFLAQDAVILGIQDEKYWPLMPPLPSYGYGREHLGPRYSSLIHGQNLKDVVITGHNGTINGQGQMWWTKYLHKLLNHTRGPLVQLMWSSDIVISNITLLDSPFWTLHPYDCKNVTIKNVTILAPTYKAPNTDGIDPGKYIYILLNSSEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGKPSRNIVIRNLVVRSNVSAGISIGSEMSGGVSNITIENILVWNSRRAIRIKTAPGRGGYVSQITYKNLTFNNVRVGIVIKTDYNQHPDNRYDPNALPILKDISFTNVRGKGVKVAVRIQGSEEIPIRNVTFHDMLVGITKKKKHIFQCAFVEGRVIGTIFPAPCGNFDQYNEQGKLVKHSTFHNVTDIDYEI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1511 493 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 16 491 - -
Lal4g1511 493 PANTHER PECTIN LYASE-RELATED 16 491 - -
Lal4g1511 493 SMART pbh1 361 382 IPR006626 -
Lal4g1511 493 SMART pbh1 234 261 IPR006626 -
Lal4g1511 493 SMART pbh1 304 326 IPR006626 -
Lal4g1511 493 SMART pbh1 270 291 IPR006626 -
Lal4g1511 493 SMART pbh1 400 421 IPR006626 -
Lal4g1511 493 SMART pbh1 332 353 IPR006626 -
Lal4g1511 493 Gene3D - 57 455 IPR012334 -
Lal4g1511 493 SUPERFAMILY Pectin lyase-like 55 466 IPR011050 -
Lal4g1511 493 Pfam Glycosyl hydrolases family 28 162 450 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1511 Lal-Chr4 19282313 19290156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1511 14 493 Glycoside Hydrolase AT1G19170 70.528 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1511 - - jre:108986550 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1511 4 19282313 19290156 Lal4g1511 4 19282313 19290156 ECH
Lal17g1485 17 16288814 16291693 Lal4g1511 4 19282313 19290156 LSH
Lal7g1045 7 16591285 16596512 Lal4g1511 4 19282313 19290156 PCT
Lal19g1187 19 15299920 15305428 Lal4g1511 4 19282313 19290156 PCT
Lal4g1511 4 19282313 19290156 Lal7g1045 7 16591285 16596512 PCT
Lal4g1511 4 19282313 19290156 Lal19g1187 19 15299920 15305428 PCT