Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1187 ATGATGGTGGATACCTCAACTCTTGGACGGTTCCACCACCAAAAACTCGACTTTAAGCGCTGGGTTCCAACATTATTAACCTCCTACAAGACCCTTTTCACGGTTCTATGGATCGCGGCATTCGCATCGATTTTCGTGTGGCAGAGGAACATAGTCGGTGGTTTCTTCGTGTTCGGTCGTGCCACTGCGGCGAGGCCAATACCGAAGCTGAGGCCGGTGGCTTTCAATTTGACGGATTTCGGAGGGATTGGTGATGGTGTTACTCTAAACACTGGTGCATTTGAGAGGGCAATTTCGGCAATCTCTAAATTAGGGAAGAAAGGTGGTGGCCAGCTTAATGTTCCTTCGGGTCGTTGGCTTACGGCGCCGTTTAATCTTACCAGTCATATGACTCTATTTCTAGCTGAAGATTCTGTTATACTTGGACTTGATGATGAGAAGTATTGGCCACTAATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAGCGTGGTGGAAAAAATATCGCCAGAAGCGTCTCAATCACACAAGGGGGCCACTTGTTCAAATCATGTGGTCTAGTGACATTGTGATCACTAATATTACTCTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAGAACATTACAATAAGACATGTTACAATACTGGCTCCTGTATTCGAAGCTCCAAATACTGATGGCATAGATCCTGGCAAGTATATTCTTCTGAATTCTTGTGAGGATATGTTGATAGAGGATTGTTACATAAGTACGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGGATTGCTTATGGGAGGCCTTCCAAGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGGGTGTCAATAGGCAGTGAGATGTCTGGTGGGGTATTCAATGTCACTGTGGAGAATCTTCTTGTATGGGACTCTAGACGTGCGGTGAGGATTAAGACTGCTCCTGGACGAGGTGGATATGTGCGTCAAATAACTTATCGGAATCTAACATTTGAGAATGTCCGTGTTGGAATTGTCATGAAGACAGATTACAATGAACACCCTGATAATGGGTATGACCCTACAGCACTTCCAGTACTCAAAGACATAAGCTTTACCTCGGTCCATGGCCAGGGAGTCCGTGTGCCGGTACGTATTCATGGTAGTGAAGAGATTCCTGTGAGGAATGTGACTTTTCAGGATATGTCAGTTGGGCTAACCTACAAGAAGAAGCATATCTTTCAATGTGCCTTTGTTCAAGGCCGCGTAATCGGGACCATCTTTCCTGCACCCTGTGTGAACCTTGATCGTTACAACGAGCAAGGACAGCTGGTGGAGCATTCTGCATCCCAGAATGTAACGGATATAGATTATGATTTTTGA 1500 0.4513 MMVDTSTLGRFHHQKLDFKRWVPTLLTSYKTLFTVLWIAAFASIFVWQRNIVGGFFVFGRATAARPIPKLRPVAFNLTDFGGIGDGVTLNTGAFERAISAISKLGKKGGGQLNVPSGRWLTAPFNLTSHMTLFLAEDSVILGLDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVITNITLRDSPFWTLHPYDCKNITIRHVTILAPVFEAPNTDGIDPGKYILLNSCEDMLIEDCYISTGDDAIAIKSGWDQYGIAYGRPSKNIMIRNLVVRSMVSAGVSIGSEMSGGVFNVTVENLLVWDSRRAVRIKTAPGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDNGYDPTALPVLKDISFTSVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCVNLDRYNEQGQLVEHSASQNVTDIDYDF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1187 499 SUPERFAMILY Pectin lyase-like 66 472 IPR011050 -
Lal19g1187 499 SMART pbh1 367 388 IPR006626 -
Lal19g1187 499 SMART pbh1 242 269 IPR006626 -
Lal19g1187 499 SMART pbh1 338 359 IPR006626 -
Lal19g1187 499 SMART pbh1 310 332 IPR006626 -
Lal19g1187 499 SMART pbh1 428 449 IPR006626 -
Lal19g1187 499 SMART pbh1 276 297 IPR006626 -
Lal19g1187 499 PANTHER PECTIN LYASE-RELATED 22 497 - -
Lal19g1187 499 Pfam Glycosyl hydrolases family 28 170 458 IPR000743 GO:0004650|GO:0005975
Lal19g1187 499 Gene3D - 60 461 IPR012334 -
Lal19g1187 499 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1187 Lal-Chr19 15299920 15305428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1187 10 498 Glycoside Hydrolase AT1G19170 74.451 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1187 - - gmx:100818529 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1187 19 15299920 15305428 Lal19g1187 19 15299920 15305428 ECH
Lal7g1045 7 16591285 16596512 Lal19g1187 19 15299920 15305428 LSH
Lal19g1187 19 15299920 15305428 Lal17g1485 17 16288814 16291693 PCT
Lal19g1187 19 15299920 15305428 Lal4g1511 4 19282313 19290156 PCT
Lal17g1485 17 16288814 16291693 Lal19g1187 19 15299920 15305428 PCT
Lal4g1511 4 19282313 19290156 Lal19g1187 19 15299920 15305428 PCT