Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0481 ATGGCAGGGAAGGTCAAGAACCACAACAAGGTGGGGAATGAATTGTGTTGTGGTTTCATGGGTAGAGTTCTTCAACTTAAAAGCTATAAGCTTAGAACATCATCTGTTCATTCACTACCTGTGAAGCCTAGCAACAATGCACCACAGAGAGATCATATCAAAAATGAACCTAAGATGTCTCCAAATGATGAATCTAAGGTTCTACAGATAAGCTACACTTACACTCCTGCACTCACTGAGAAACATAAACTGAGTAAAGACCAAAAACCTGCTAAAAAGGTCACCTTTATTGATCAAAATGAGAAACATTCAGATGCTGCAATAAACTTATCAACAACATCATCAACAATAAGGAACGATCACCAGAAAAAGCCACAGAAAGAGTTCAGTGAAAACTCTCTAGTACTTGCTACAATAAGCACTGGTCACCAGAGAGACTTTGGTGCCTTGAAACTCACAGGGAATTTACTTGTAAACAACACCCCAAGAAGAAAGAGTGTGGACTTCGTTCCTAAGAATAAAGAGTTAAGCTATATATCCAATTCTTACAGTAACAATGCTGGCCAAGTCATGATGGGGAATATAATCAGGGGAAACAGTGATGATCTTGCAAAGTTTAGAAGTACAAGGAACAATATAATGGACCCTGAAGTGTTGAAGTCCATTGGAAATGAAGCATACAAGCAGAGAAAATTTGAAGAGGCTTTATCTTTGTATGACAAAGCCATTGCTATTGATTCAAATAAGGCAACATATCATTGCAACAAAAGTGCAGCTTTGATTGCCTTAGGAAGTTTTCAGGAAGCAATTGTTGAGTGTCAGGAATCTATCCGGCTTGAACCTTCTTATCACAGAGCTTATAACCGTTTGGCAACAATCTATTTCAGATTAGGACAAGCTGAAAAGGCACTGGATTGCAGTAACTCAACCCCATATCCTGATTCCTTGCTCCCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAAGGAATGCATAGAAGCTCGGAAAGTCAACAGATGGAGTGTTATACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCATCACCACAGGTTTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCTTAAGATATCAGGAGGCGCATGCCGCCTATGAGAAAATGCCGAAATATTCAGTTGATTGGTGTAACAACATATTTGGCCTGGCTTGTAGTGCTTACCTGTTGGTTATAGGCGCACAGGTTCACTTAGCATCCGGGAGGTTTGAGGATGCTGTGGCAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAAGCAACGTGGAGGTGAATGTAGTTTTAAGGAGGGCCAGAACAGTGACATCTGCTAGAATGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCCTGTTCCGCATACAACGAAGGACTTGAGCATGATCCTCACAATTCAGTTCTGTTATGCAACAGAGCGGCATGTCGGTCTAAGCTAGGCCAATATGAGAAAGCGGTTGAAGATTGTAATGTAGCTCTTATAGTTCAACCGAATTATAGCAAAGCAAGGTTAAGGAGAGCAGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTAAAGACTATGAAATGCTAATAAGAGAAAAACCAGGGGATGAGGAAGTGGCCAGGGCCTTATTTGAGGCCCAGCTCCAACTCAAAATGCTACGCGGTGAAGATATCAAAGACTTGAAATTTGGTTCAAATTTGGTTTTCATCTCAACCGCCAATCGGTTTAGACATTACGTGACCTTACCTGGGATGGCTGTTGTACTCTTTAGCAACAAGGAAACCAACAAGCAAGTATTGCTGATGTTGGAGAAAACCAGCAAGAGATTCCCGTCAGTAAATTTCCTTAAGGTGGAGATTGAAGACCATCCATTCTTAGCGAAATCAGAAGGTGTGAGCTCTATCCCGGCTTTCAAAATATACAAGAATGGATCAAGGGTAGAAGAAATTTCAGGAAAAAACCATGATTTGTTAGAAAGATCAGTTGAACTGTATAGCAGCTGA 2046 0.4101 MAGKVKNHNKVGNELCCGFMGRVLQLKSYKLRTSSVHSLPVKPSNNAPQRDHIKNEPKMSPNDESKVLQISYTYTPALTEKHKLSKDQKPAKKVTFIDQNEKHSDAAINLSTTSSTIRNDHQKKPQKEFSENSLVLATISTGHQRDFGALKLTGNLLVNNTPRRKSVDFVPKNKELSYISNSYSNNAGQVMMGNIIRGNSDDLAKFRSTRNNIMDPEVLKSIGNEAYKQRKFEEALSLYDKAIAIDSNKATYHCNKSAALIALGSFQEAIVECQESIRLEPSYHRAYNRLATIYFRLGQAEKALDCSNSTPYPDSLLPFQAQALQNHLKECIEARKVNRWSVILKETQSAISLGADSSPQVYALQTEALLKLLRYQEAHAAYEKMPKYSVDWCNNIFGLACSAYLLVIGAQVHLASGRFEDAVAAAQQAAKVDPSNVEVNVVLRRARTVTSARMSGNLLFKASKFMEACSAYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAVEDCNVALIVQPNYSKARLRRADCNAKLERWEAAIKDYEMLIREKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVFISTANRFRHYVTLPGMAVVLFSNKETNKQVLLMLEKTSKRFPSVNFLKVEIEDHPFLAKSEGVSSIPAFKIYKNGSRVEEISGKNHDLLERSVELYSS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0481 681 Pfam Tetratricopeptide repeat 519 548 IPR019734 GO:0005515
Lal6g0481 681 MobiDBLite consensus disorder prediction 105 119 - -
Lal6g0481 681 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 679 IPR044534 -
Lal6g0481 681 Pfam Tetratricopeptide repeat 223 270 - -
Lal6g0481 681 MobiDBLite consensus disorder prediction 35 65 - -
Lal6g0481 681 MobiDBLite consensus disorder prediction 105 129 - -
Lal6g0481 681 Gene3D Tetratricopeptide repeat domain 215 568 IPR011990 GO:0005515
Lal6g0481 681 SUPERFAMILY TPR-like 216 439 IPR011990 GO:0005515
Lal6g0481 681 ProSiteProfiles TPR repeat profile. 403 436 IPR019734 GO:0005515
Lal6g0481 681 Pfam Tetratricopeptide repeat 285 306 IPR019734 GO:0005515
Lal6g0481 681 Pfam Thioredoxin 616 672 IPR013766 -
Lal6g0481 681 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 679 - -
Lal6g0481 681 SMART tpr_5 517 550 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 216 249 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 449 482 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 403 436 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 483 516 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 250 283 IPR019734 GO:0005515
Lal6g0481 681 SMART tpr_5 284 311 IPR019734 GO:0005515
Lal6g0481 681 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Lal6g0481 681 Coils Coil 523 543 - -
Lal6g0481 681 CDD TRX_family 611 666 - -
Lal6g0481 681 Pfam Tetratricopeptide repeat 471 504 - -
Lal6g0481 681 Gene3D Glutaredoxin 584 680 - -
Lal6g0481 681 SUPERFAMILY Thioredoxin-like 565 674 IPR036249 -
Lal6g0481 681 SUPERFAMILY TPR-like 454 565 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0481 Lal-Chr6 3066268 3069947 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0481 K09527 - gmx:100791862 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0481 6 3066268 3069947 Lal6g0481 6 3066268 3069947 ECH
Lal22g0447 22 2919277 2923051 Lal6g0481 6 3066268 3069947 LSH
Lal6g0481 6 3066268 3069947 Lal17g0418 17 2810464 2814378 PCT
Lal6g0481 6 3066268 3069947 Lal4g0373 4 2550255 2553809 PCT
Lal17g0418 17 2810464 2814378 Lal6g0481 6 3066268 3069947 PCT
Lal4g0373 4 2550255 2553809 Lal6g0481 6 3066268 3069947 PCT