Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0373 ATGGCAGGGAAGATCAATAACAAGGTGGAAATTAACTTGGGGTGTGGTTTTGTGGAGAGAATTTTCCACTTCAGAAGCAATAGGCTGAAAAAATCATCTGTTCATTCACTACCTATGAAGGGTAGCAATAATGCACAACAGGCCAAAAGAGAAGAATTCAAGAGGCCTATAAACCATGAAACAAAGGTTCCAAGAAACAACATTGCTGAGACTGTTCCAAATGATTCATCTCACACAATTAAAGTGGATCAGAAACCTGCAAGAAAGAGCAATTATGGTAATCATGGAGCACTACCTTCTTCTGCATTCCGAAACAACGGCAAAAAATCGAGACCATCAGATGCTGCTAGAAGCTCAACATCGTCATCTTCTGGAAACTCAAGCCACACAAAGATTCAACAAAACCATGACTCAAGTGAAGAAAGTAAGCAACACGGAGAACCTAATGGTAATTCTTTTCAACTTGCTAGGATAAGTACTACTCACCAAAAAGAAAATGAAAGCAAATCACCAACCAAAGACTTCGGTACCTTGAAACTCACAGGGAATTTGATTATGAATAACAGCCCAAGAAATAGTGCTACCAAGAATAAAGAGTTGATTTCTATGTCTCCTAGTTATAGTAATGCTAACAAAGGTGTAATGGGGAATATTATGAGGAGGAACTATGATGAGGTTGCGCGGATTCAAAGACCGGGGAATCGAGTAGACCCCGAGGTTTTTAAGTCCAAGGGAAATGAAGCATACAAGCAGAGAAGATTTGAAGAGGCTTTGGTTTTTTATGACAGAGCAATTGCTCTCAGCTCCAATAAGGCAATTTATCATTGCAATAAGAGTGCAGCTTTAATTGGCTTAGGAAGGTTTGTGCTGGCAATTGTTGAGTGTGAAGAAGCTATCAGGTTGGAACCTTCATATGGCAGAGCCCACAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAAAAGGCACTGAATTGCAATCAAGCAACCACAGATTTTGATTCTGTACTCACTTTCCAAGCTCAGGCTCTTTCAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTTAATGAGTGGAACGTTATACTAAAGGAAACACAGTCTGCAATAGCTCTAGGTGCTGATTCAGCTCCACAGATCTTTGCTTTGCAAACTGAAGCATTCCTGAAGCTCCTAAGACATCAAGAAGCATATGCTGCCTATGAGAAAATGCCGAAATTTGATCCTGACTGGTGTAACAAAATATTCGGCCCGGCTCGCAGTGCTTACCTTTTGATGATAGGCTCACAAGTTTACTTGGCAGCTGGCAGATTCGAGGATGCCGAGACAGTATCTAAGCAAGCAGCTAAACTTGATCCAAGCAACAGCGAGGTGAATGTGGTGGTAAGGAGGGCCAGAGCAGTAATATCAGCCAGAATTAGTGGTAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCGGTATACAACGAAGGATTAGAACACAATCCATACAACTCCGTTCTTCTATGCAACAGGGCAGCGTGTCGTTCTAAACTCGGCCAATTTGAGAAAGCAATTGAAGATTGCAATTCAGCCCTTAAAGTGCAACCTAGTTATAGCAAGGCAAGGTTTCGGAGAGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGCTGCTATTCAAGACTACGAAATGCTAATACGAGAAAAGCCGGGCGATGAGGAGGTAGCAAGGGCTCTATTTGAGGCTCAGCTCCAACTTAAGACGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGGTCAAATTTGGTTTTCATCTCGAGTAATGATCGGTTTAGACATTATGTAACATCACCTGGTATGTCTGTGGTGCTGTTTTTCAACAAGACAACCCATAAGCAAGTATTGCTGGTGTTGGAGCAAACCTGCAAAAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGACCATCCTTATTTGGCCAAATCAGAAGGAGTGAGCTATATTCCATCCTTCAAAATATACAAGAATGGTTCAAAGGTCAAAGAAATTCCAGGAAACAGCCACGAGTTGTTAGAAAGATCAGTTAAATTATATAGCAGTTGA 2112 0.4138 MAGKINNKVEINLGCGFVERIFHFRSNRLKKSSVHSLPMKGSNNAQQAKREEFKRPINHETKVPRNNIAETVPNDSSHTIKVDQKPARKSNYGNHGALPSSAFRNNGKKSRPSDAARSSTSSSSGNSSHTKIQQNHDSSEESKQHGEPNGNSFQLARISTTHQKENESKSPTKDFGTLKLTGNLIMNNSPRNSATKNKELISMSPSYSNANKGVMGNIMRRNYDEVARIQRPGNRVDPEVFKSKGNEAYKQRRFEEALVFYDRAIALSSNKAIYHCNKSAALIGLGRFVLAIVECEEAIRLEPSYGRAHNRLATIYFRLGEAEKALNCNQATTDFDSVLTFQAQALSNHLSKCTEARKVNEWNVILKETQSAIALGADSAPQIFALQTEAFLKLLRHQEAYAAYEKMPKFDPDWCNKIFGPARSAYLLMIGSQVYLAAGRFEDAETVSKQAAKLDPSNSEVNVVVRRARAVISARISGNLLFKASKFMEACAVYNEGLEHNPYNSVLLCNRAACRSKLGQFEKAIEDCNSALKVQPSYSKARFRRADCNAKLERWEAAIQDYEMLIREKPGDEEVARALFEAQLQLKTLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMSVVLFFNKTTHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVSYIPSFKIYKNGSKVKEIPGNSHELLERSVKLYSS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0373 703 Pfam Tetratricopeptide repeat 507 538 IPR001440 GO:0005515
Lal4g0373 703 MobiDBLite consensus disorder prediction 64 80 - -
Lal4g0373 703 Gene3D Tetratricopeptide repeat domain 237 590 IPR011990 GO:0005515
Lal4g0373 703 SUPERFAMILY TPR-like 236 581 IPR011990 GO:0005515
Lal4g0373 703 CDD TRX_family 612 699 - -
Lal4g0373 703 MobiDBLite consensus disorder prediction 31 152 - -
Lal4g0373 703 Pfam Tetratricopeptide repeat 434 504 - -
Lal4g0373 703 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Lal4g0373 703 Gene3D Glutaredoxin 597 702 - -
Lal4g0373 703 SMART tpr_5 471 504 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 238 271 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 505 538 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 424 458 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 539 572 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 381 414 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 272 305 IPR019734 GO:0005515
Lal4g0373 703 SMART tpr_5 306 339 IPR019734 GO:0005515
Lal4g0373 703 Coils Coil 545 565 - -
Lal4g0373 703 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 702 IPR044534 -
Lal4g0373 703 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 702 - -
Lal4g0373 703 MobiDBLite consensus disorder prediction 47 61 - -
Lal4g0373 703 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Lal4g0373 703 MobiDBLite consensus disorder prediction 31 46 - -
Lal4g0373 703 MobiDBLite consensus disorder prediction 94 133 - -
Lal4g0373 703 Pfam Thioredoxin 609 692 IPR013766 -
Lal4g0373 703 SUPERFAMILY Thioredoxin-like 586 691 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0373 Lal-Chr4 2550255 2553809 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0373 K09527 - gmx:100814381 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0373 4 2550255 2553809 Lal4g0373 4 2550255 2553809 ECH
Lal17g0418 17 2810464 2814378 Lal4g0373 4 2550255 2553809 LSH
Lal22g0447 22 2919277 2923051 Lal4g0373 4 2550255 2553809 PCT
Lal6g0481 6 3066268 3069947 Lal4g0373 4 2550255 2553809 PCT
Lal4g0373 4 2550255 2553809 Lal22g0447 22 2919277 2923051 PCT
Lal4g0373 4 2550255 2553809 Lal6g0481 6 3066268 3069947 PCT