Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0418 ATGGCAGGGAAGGTCAATAATAAAGTGGGAATTGACTTTGGGTGTGGTTTTGTGGAGAGAATTCTTCACCTCAAAAGCAATAGACTGAAAAAATCATCCATTCATTCACTACCTGTGAAGGGTAGCAACAATGCACAACATGCTAAAAAAGAATCTAACATGCCTTCAGATCATGAAACAAAGGTTCCAAGAAACAGCATCACTAAAACTGTTCCAAATGATTCAACTGACACAGTTAAAGTGGATCAGAAACCTGCAAGAAAGAGCAACTATGGTAGTCATGGAGCACCACCTTCTTCTGCATACCGAAACAACGGCCAAAAACCAAGACATTCAGATGCTGCTAGAAGCTCAACATCATCATCTTCTGGCAACTCAAACCATACAAAGGTTCAATTTCAACAGAACCATGACTCAAGTGATGAAAGCAAGCAACAGAGAGAACCTAATGGAAATTCTCTTCAACTTGCTAGGATAAGTACTAATCACCAAAAAGACAATGAAAGCAAATCACCATCCAAAGACTTAGGTGCCTTGAAAATCACAGGGAATTTGATAATGAATAACAGTCCAAGAAATAGTGTTACCAAAAGCATGGAATATGTTCCTAAGAATAAAGAGTTGAACTCTATGTCCCCTTGTTATAGTCATGCTAACAAAGCCTTAATGGGAAACATCATGAGGAGGAACGGTGATGAAGTTGCGCAGTTTCGAAGTCCGAGGAATAGAATTGATCCTGAGTTTTTGAAGTCCATGGGGAATGAAGCATACAACAAGGGAAGATTTGAAGAGGCTTTGGTTTTGTATGACCGAGCCATTACTCTTGACTCCAATAAGGCAATTTATCATTGCAATAAGAGTGCAGCCTTAATTGGCTTGGGACAGTTTCTTCAAGCAATTGTTGAGTGTGAGGAAGCTATTAGGTTAGAACCTTCATATGGCAGAGCCCACAATCGTTTGGCAACAATATATATCAGATTGGGAGAAGCTGAAAAGGCACTGAATTGCAATCAAGCTACCCCAGATGTTGATCCTGAATTGACTTTCCAAGGTGAGGCTCTTCAAAATCACCTTAACAAATGCACCGAAGCTCGGAAATTCAATGACTGGAAAGTTGTACTAAAAGAAACACATTCTGCAATATCCCTTGGTGCTGATTCAGCTGCACAGGTCTATGCTTTACAAACTGAAGCGTTGTTGAAGCTCCTAAGACATCAAGAGGCATATGCCGCGTATGAAAAAATGCCAAAATTTGACCGTGATTCGTGTAACAAATTATTTGGTCCGGTTTGTAGTGCTTACCTTTTGATGATTGATGCACAGGTTTACTTGGCAGCCGGCAGATTTGAAGATGCTGAGGCAGTATCCAAGCAAGCTGCTAAACTTGATCCTAGCAACAGCGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGTAGCATCAGCCAGAATGAGTGGTAACTTGCTCTTCAAGGCATCGAAATTCACGGAAGCATGTGCAGTATACAATGAAGGGCTAGAACATGATCCATACAATTCAGTTCTTCTATGCAATAGGGCAGCATGTCGTTCTAAGCTACGCCAATTTGAGAAAGCAATTGAAGATTGTAATGCAGCCCTTGTAATTCAGCCTAGTTATAGCAAGGCAAGGTTGCGAAGGGCAGATTGCAATGCTAAGTTGGAAAGATGGGAATCTGCTATACATGACTATGAAATGCTAATAAGAGAAAAGCCAGGGAATGAGGATGTAGCCAGGGCTTTATTTGAGGCTCGGCTCCAACTCAAAATGCTACGCGGCGAAGATATTAAGGACTTGAAATTCGGCTCAAATTTGGTTAGCATATCGAGCAATGATCGGTTTAGACATTATGTAACATCACCTGGTATGGCTGTGGTGCTCTTTTGCAACAAGACAACCCACAAGCAAGTATTGCTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCAATTAATTTCCTCAAGGTGGAGATTGAAGACCACCCCTACTTGGCTAAATCAGAAGGAGTGAACTCTATTCCATCCTTCAAAATTTACAAGAATGGATCAATTGTTAAAGAAATTTCAGGAAACAGCCACGATTTGTTAGAAAGATCAGTTAAATTATATAGCAGCTAA 2136 0.4096 MAGKVNNKVGIDFGCGFVERILHLKSNRLKKSSIHSLPVKGSNNAQHAKKESNMPSDHETKVPRNSITKTVPNDSTDTVKVDQKPARKSNYGSHGAPPSSAYRNNGQKPRHSDAARSSTSSSSGNSNHTKVQFQQNHDSSDESKQQREPNGNSLQLARISTNHQKDNESKSPSKDLGALKITGNLIMNNSPRNSVTKSMEYVPKNKELNSMSPCYSHANKALMGNIMRRNGDEVAQFRSPRNRIDPEFLKSMGNEAYNKGRFEEALVLYDRAITLDSNKAIYHCNKSAALIGLGQFLQAIVECEEAIRLEPSYGRAHNRLATIYIRLGEAEKALNCNQATPDVDPELTFQGEALQNHLNKCTEARKFNDWKVVLKETHSAISLGADSAAQVYALQTEALLKLLRHQEAYAAYEKMPKFDRDSCNKLFGPVCSAYLLMIDAQVYLAAGRFEDAEAVSKQAAKLDPSNSEVNAVVRRARAVASARMSGNLLFKASKFTEACAVYNEGLEHDPYNSVLLCNRAACRSKLRQFEKAIEDCNAALVIQPSYSKARLRRADCNAKLERWESAIHDYEMLIREKPGNEDVARALFEARLQLKMLRGEDIKDLKFGSNLVSISSNDRFRHYVTSPGMAVVLFCNKTTHKQVLLVLEQTCKRFPSINFLKVEIEDHPYLAKSEGVNSIPSFKIYKNGSIVKEISGNSHDLLERSVKLYSS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0418 711 MobiDBLite consensus disorder prediction 93 134 - -
Lal17g0418 711 CDD TRX_family 620 707 - -
Lal17g0418 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 710 IPR044534 -
Lal17g0418 711 MobiDBLite consensus disorder prediction 65 79 - -
Lal17g0418 711 SUPERFAMILY Thioredoxin-like 597 700 IPR036249 -
Lal17g0418 711 SMART tpr_5 479 512 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 280 313 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 314 347 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 547 580 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 246 279 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 389 422 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 513 546 IPR019734 GO:0005515
Lal17g0418 711 SMART tpr_5 433 466 IPR019734 GO:0005515
Lal17g0418 711 Gene3D Tetratricopeptide repeat domain 245 598 IPR011990 GO:0005515
Lal17g0418 711 ProSiteProfiles TPR repeat profile. 433 466 IPR019734 GO:0005515
Lal17g0418 711 Gene3D Glutaredoxin 605 710 - -
Lal17g0418 711 Pfam Tetratricopeptide repeat 291 346 - -
Lal17g0418 711 SUPERFAMILY TPR-like 246 468 IPR011990 GO:0005515
Lal17g0418 711 MobiDBLite consensus disorder prediction 33 50 - -
Lal17g0418 711 Pfam TPR repeat 253 288 - -
Lal17g0418 711 MobiDBLite consensus disorder prediction 146 162 - -
Lal17g0418 711 MobiDBLite consensus disorder prediction 33 181 - -
Lal17g0418 711 Pfam Tetratricopeptide repeat 440 513 - -
Lal17g0418 711 SUPERFAMILY TPR-like 484 595 IPR011990 GO:0005515
Lal17g0418 711 ProSiteProfiles TPR repeat profile. 246 279 IPR019734 GO:0005515
Lal17g0418 711 Pfam Thioredoxin 641 702 IPR013766 -
Lal17g0418 711 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 710 - -
Lal17g0418 711 Pfam Tetratricopeptide repeat 515 546 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0418 Lal-Chr17 2810464 2814378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0418 K09527 - gmx:100814381 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0418 17 2810464 2814378 Lal17g0418 17 2810464 2814378 ECH
Lal17g0418 17 2810464 2814378 Lal4g0373 4 2550255 2553809 LSH
Lal22g0447 22 2919277 2923051 Lal17g0418 17 2810464 2814378 PCT
Lal6g0481 6 3066268 3069947 Lal17g0418 17 2810464 2814378 PCT
Lal17g0418 17 2810464 2814378 Lal22g0447 22 2919277 2923051 PCT
Lal17g0418 17 2810464 2814378 Lal6g0481 6 3066268 3069947 PCT