Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0447 ATGGCAGGGAAGGTTAAGAACAACAAGGTGGGGAATGAATTGGGTTGTGGTTTCATGAGTAGAATTCTCCAACTCAAAAGCTATAAGCTTAGAACATCTTCTGTTCATTCACTACCCATTAAGCCTAGCAACAATGCACCACAGAGAGATCATGTAAAAAATGAACCTAGGATGTCTCCAAATGAAGAATCAAAGGTTCTTCAAAGAAACTCCAAAAAACATGCAAGAAAGGTCACTTTTATTGATCAAAATCAGAAACATTCAGATGCTGCAAGAAACTCAACATCATCATCATCATCAACTCACACAAAAGTTGAACAAAACAAAGACACTACTGATGAGAGAAAGCCCAATGGAAACTCTTTGCAACTTGCTAGAATAAACACTAGTCATCAGAGAGACAATGAGAGCAACAAGTCCCCAGTGAAAGACTTTGGTGCCTTGAAACTCACTGGGAATTTACTTGTAAACAACACACCAAGAAGAAAAAGTGTGGAATTTGTTCCTAAGAATAAAGATATCAACTTTATGTTCAGTTCTTATAGTAATCCAGGCAAAGTCATGATGGGTAATATCATAAGGGGGAATAGTGATGACCTTGCACAGTTTAGAAGTCCAAAGAACAATAAAGTGGACCCTGAAGTGTTGAAGTCCATTGGAAATGAAGCATACAAACAGGGAAAATTTGAAGAGGCTTTGGCTTTGTATGACAAAGCCATTGCTATTGATTCAAATAAGGCAACATATCATTGCAACAAGAGTGCAGCTTTGATTGGCTTAGCAAGGTTTCAGGAAGCAATTGTTGAGTGTCAGGAATCTATACGGCTTGAACCTTCTTATCACAGAGCTTATAACCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAAAAGGCACTGGATTGCAGTAACTCAACCCCATGCCCTGATTCCTTACTCACTTTCCAAGCCCAGGCTCTTCAAAATCACCTTAACAAATGCAATGAAGCTCGGAAAGTCGGTGAATGGAGTGTTATACTAAAGGAAACACATTCTGCAATATCCATAGGTGCTGATTCAGCACCACAGGTATATGCTTTAAAAACTGAAGCCTTGCTGAAGCTTTTAAGATATCAGGAGGCACATGCCACCTACGAGAAAATACCGCAGTTTTCAGTTGATTGGTGTAACAATATATTTGGCCTGGCTCATAGTGCATACCTATTGATTATAGGCGCACAGGTTCACTTGGCAACTGGCAGGTTTGAGGATGCTGTGAAAGCAGCTCAACAAGCAGCAAAAGTTGACCCAAGCAACATAGATGTAAATGTAGTTTTAAGGAGGGCCAGAGCAGCGACATCGGCTAGAATGAGTGGAAACTTGCTCTTCAAGGCATCAAAATTCATGGAAGCATGTTCCGCATACAATGAAGGACTAGAGCATGATCCACACAACTCAGTTCTGATATGCAACAGAGCAGCGTGTCGGTCTAAGCTAGGCCAATATGAGAAAGCAATTGAAGATTGTAATGCAGCTCTTACAGTTCAACCATGTTATAGCAAAGCAAGATTAAGGAGGGCAGATTGCAATGCCAAGTTGGAGAGATGGGAAGCTGCTATTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGACGAGGAAGTAGCGAAGGCTTTGTTCGAGGCCCAGCTCCAACTCAAGATGTTACGCGGAGAAGATATCAAGGACTTGAAATTTGGTTCAAATTTGGTTTTTATCTCTAGCAATGATCGGTTCAGACATTATGTAACTTTACCTGGGATGACAGTGGTTCTCTTTAGCAACAAGAAAACCAACAAACAAGTATTGTTGATGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCTTACTTAGCAAAATCAGAAGGTGTGAACTCTATCCCAACCTTCAAAATATACAAGAACGGATCAAGGGTAAAAGAAGTTTCTGGAAAAAACAACGAGTTGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2037 0.4021 MAGKVKNNKVGNELGCGFMSRILQLKSYKLRTSSVHSLPIKPSNNAPQRDHVKNEPRMSPNEESKVLQRNSKKHARKVTFIDQNQKHSDAARNSTSSSSSTHTKVEQNKDTTDERKPNGNSLQLARINTSHQRDNESNKSPVKDFGALKLTGNLLVNNTPRRKSVEFVPKNKDINFMFSSYSNPGKVMMGNIIRGNSDDLAQFRSPKNNKVDPEVLKSIGNEAYKQGKFEEALALYDKAIAIDSNKATYHCNKSAALIGLARFQEAIVECQESIRLEPSYHRAYNRLATIYFRLGEAEKALDCSNSTPCPDSLLTFQAQALQNHLNKCNEARKVGEWSVILKETHSAISIGADSAPQVYALKTEALLKLLRYQEAHATYEKIPQFSVDWCNNIFGLAHSAYLLIIGAQVHLATGRFEDAVKAAQQAAKVDPSNIDVNVVLRRARAATSARMSGNLLFKASKFMEACSAYNEGLEHDPHNSVLICNRAACRSKLGQYEKAIEDCNAALTVQPCYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVAKALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTLPGMTVVLFSNKKTNKQVLLMLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVNSIPTFKIYKNGSRVKEVSGKNNELLERSVKLYSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0447 678 MobiDBLite consensus disorder prediction 117 131 - -
Lal22g0447 678 MobiDBLite consensus disorder prediction 84 105 - -
Lal22g0447 678 Pfam Tetratricopeptide repeat 282 303 IPR019734 GO:0005515
Lal22g0447 678 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 677 - -
Lal22g0447 678 Coils Coil 520 540 - -
Lal22g0447 678 SMART tpr_5 213 246 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 400 433 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 480 513 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 514 547 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 281 308 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 247 280 IPR019734 GO:0005515
Lal22g0447 678 SMART tpr_5 446 479 IPR019734 GO:0005515
Lal22g0447 678 CDD TRX_family 608 667 - -
Lal22g0447 678 Pfam Thioredoxin 614 669 IPR013766 -
Lal22g0447 678 SUPERFAMILY TPR-like 450 562 IPR011990 GO:0005515
Lal22g0447 678 Gene3D Glutaredoxin 575 677 - -
Lal22g0447 678 SUPERFAMILY TPR-like 213 436 IPR011990 GO:0005515
Lal22g0447 678 Pfam Tetratricopeptide repeat 407 479 - -
Lal22g0447 678 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 677 IPR044534 -
Lal22g0447 678 SUPERFAMILY Thioredoxin-like 565 667 IPR036249 -
Lal22g0447 678 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Lal22g0447 678 MobiDBLite consensus disorder prediction 36 144 - -
Lal22g0447 678 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Lal22g0447 678 Pfam TPR repeat 220 252 - -
Lal22g0447 678 MobiDBLite consensus disorder prediction 48 83 - -
Lal22g0447 678 Pfam Tetratricopeptide repeat 484 511 IPR001440 GO:0005515
Lal22g0447 678 Gene3D Tetratricopeptide repeat domain 212 565 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0447 Lal-Chr22 2919277 2923051 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0447 K09527 - gmx:100782846 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0447 22 2919277 2923051 Lal22g0447 22 2919277 2923051 ECH
Lal22g0447 22 2919277 2923051 Lal6g0481 6 3066268 3069947 LSH
Lal22g0447 22 2919277 2923051 Lal17g0418 17 2810464 2814378 PCT
Lal22g0447 22 2919277 2923051 Lal4g0373 4 2550255 2553809 PCT
Lal17g0418 17 2810464 2814378 Lal22g0447 22 2919277 2923051 PCT
Lal4g0373 4 2550255 2553809 Lal22g0447 22 2919277 2923051 PCT